K00604

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00604

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00604

Determination of introduced cDNA(s)

  • J033112C19 - Rice Full-length cDNAs - Original: J033112C19

    full reading [+] show sequence

    Nucleotide sequence: J033112C19 - full reading 
    GCCTAACCCC TGACCACCCC CCCGCCTCCG CACCCGCCTC CGGTTGCCTC 
    CTCCCCTCTC GGCGGGCGGC GGCAGCAGCG GCGGCAGAGT CAGCAGACCT 
    CGCCGGGAAG CTAAAGCCCT AAAGCTCGCG GAAGGGTTTA TCGCAACGGG 
    CGATGGCGGC GGCGGAGCAG AAGGGGAAGA AGCCGAGGAC CGACGGCGCG 
    GAGGCCGAGC CCGTCGACGC CTAACCCCTG CTGCAGTCCA TCGAGAAGCT 
    CCAGGAGATC CAGGACGAGA TCGAGAAGGT TAATGAGGAA GCATGTGATA 
    AAGTTCTGGA GTTGGAACAG AAATACAACG AGGTTCGCAG ACCAGTTTAT 
    GTTCGACGGA ATAAAATTAT CAAGCAAATT CCTGACTTCT GGCTGACAGC 
    GTTTCTTAGC CATCCTATGC TTGGTGAACT ATTAACTGAA GATGATCAAA 
    AGATTTTCAA ACACTTGGAG TCTATCGATG TGGATGACTC AGAAGATATC 
    AAATCAGGCT ACTCCATTAC TCTCACATTC TCCCCCAATC CATATTTTGA 
    AGATACAAAG CTTACAAAAA CATATTCCTT TAGTGACGAT GAAGCAGTCA 
    AAGTAAAGGC TACCTCCATC AGGTGGAAGA AAGGAATGGA TATTGCCAAT 
    GATCGTGCGT ACACGAAGAA AGGGGACAAG CGAATCTTAA TTGATGAAAG 
    TTTCTTTACT TGGTTCAATA GTGAAAAGAA CAGAAGTTTT GCTCATGGAG 
    CTATGGATGA GGTGGCAGAT GTCATCAAGG AAGATCTGTG GCCTAATCTT 
    TTGAAGTACT TCAACAATGA ATTTGAAGAA GAATTAGAGC TACTGGATGA 
    CGATGACGAG GTATCTGATG ATGACGATGA GGAGGAGGAT GATGAAGACC 
    AAGGTGAAGG AGAGGAGGAT GGAGAGGAGA ACTGAGCTCT CTGTCATGTC 
    AGATTCTTTT GGCCTGGACA ACTTATGTCT GCAGAAAGCG GAGACCGGGC 
    CTCCTGGAGG GCTGAAACAG CAGGGCGTCC CCTTTTGCGG CGTTGTGGTG 
    CTCGACTTAG CTGGCAGTGT AGGGACTTGC TCCGAAAAAC TTTGTTCTAT 
    GGAGAAATAA CTCGAGTTCA ATAGATGATT TTGTTGCATG CGCGATCGAA 
    ATGTTGCGTG TTGTTTGGAA GTGTTATTTA CCTTGCCGTT GGATTAGTGT 
    TTATAACGCT ATTATATATA GAGAATGATC AAATTAAATT TTGCT

    Gene models with high sequence identity

    1. AT1G18800.1 [+] show detail - NAP1-related protein 2
      E-value: 6e-74; Score: 275.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Nucleosome assembly protein (NAP) 3.3e-48
    Coil coiled-coil 0
    HMMPanther SET 1.2e-85
    HMMPanther Nucleosome assembly protein (NAP) 1.2e-85

    See the detailed result >

    AT1G18800.1

    Model type
    Protein coding
    Short Description
    NAP1-related protein 2
    Curator Summary
    Double nrp1-1 nrp2-1 mutants show arrest of cell cycle progression at G2/M and disordered cellular organization occurred in root tips. Localize in the nucleus and can form homomeric and heteromeric protein complexes with NRP1. Bind histones Histone2A and Histone2B and associate with chromatin in vivo.
    Computational Description
    NAP1-related protein 2 (NRP2); FUNCTIONS IN: chromatin binding, histone binding, DNA binding; INVOLVED IN: cell proliferation, cell differentiation, nucleosome assembly, lateral root formation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleosome assembly protein (NAP) (InterPro:IPR002164); BEST Arabidopsis thaliana protein match is: NAP1-related protein 1 (TAIR:AT1G74560.2); Has 4380 Blast hits to 3595 proteins in 373 species: Archae - 7; Bacteria - 141; Metazoa - 1827; Fungi - 714; Plants - 336; Viruses - 93; Other Eukaryotes - 1262 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J013002A16 - Rice Full-length cDNAs - Original: J013002A16

    full reading [+] show sequence

    Nucleotide sequence: J013002A16 - full reading 
    CTCTAGGATA CAGGATGTTC AGTACTAAAA TTGAGATCGT CCTGAGCAAA 
    CAAGGACAAT TGATCACTAT AGTGAGTGGT GGTAGGATGG GTCAAGGGAC 
    TAGCTGGGCC AGAGAGGAAG GCCAGGCAGC CAGACCCTTT CCCTGCAGCC 
    CAGAAGTTGC CTCTCAACCC CAAACCTTCC AGCCTCCTGC CCCAGCACTT 
    CGTCCTTCAG GCACTAAGGG ATTGTCCCAG CCTCGGCGGA TGGTCTCTGG 
    GTCAGCCAGA GCTGTGAGTT CTTCCAAGAG ACTGGCAGTG GAAAGGGTAG 
    GAGTTGGACC CAGGGATGGA TGGAAATTTT GTGAGGTCCA AAGCTTACTG 
    TAGTTTGGGC GTGGGGCTCT TTAAGAAAAG GACTACAAGA CTACTAATAC 
    CAAATTACCA CCAAGGACCT GGCAGCTGAA GGAACCTGAA GGACCCTAAA 
    CTTCATTAGC TTCAAGGTAA AACCGCCTCT AGTTGAACCT GATATTTTGG 
    ACTAGATGGC CCACCCACCT ACCCCAGCCA GCGTGGCACC TCCCAACATG 
    CCAGGCTGGG TGAACTGATG GCAGTTCCCT CCCTAGCCCT GCCAGGGGCG 
    GAGACAATTG TCAGCCATCC CGCAGCTACG GAGTGCCAGA CCGCAGAGAC 
    AGTGCTGGTT TGACGGCACC CTCACCCCTG CACCTGCAGG ATCTGTGGGC 
    ACCCCCACCA CCCCGCTGGG ATCGTCGATG CGGCCGCACT

    Gene models with high sequence identity

    Not founds.

     

    InterPro Scan Digest

    See the detailed result >