K00626

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00626

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00626

Determination of introduced cDNA(s)

  • J033068G21 - Rice Full-length cDNAs - Original: J033068G21

    full reading [+] show sequence

    Nucleotide sequence: J033068G21 - full reading 
    GAATTTTCTC CCCTCGCGCC GCCGCCGCGT TCACCTCGGT CGTGCCGGCC 
    GCCTCCTTCT CGCTCCGCCG CCGCCGCGCT CGCTGCTCTC TCTCCCTCCC 
    ATCTCGCCCT TAGTCCGCCG CGTCCGCCTC CTTCTCTCTC CTCGCTGCTC 
    TCTCTCTCTC TCTCTCTCTC TCTCTCTCCC ATCTTGCCCT TGCTTGCTGC 
    TGGAGCTCGA AGCCCACGCC ATTTTCGCGG CCGCGGGGGA ACCCTAGCCC 
    TAGCCGCGCC AGTGCGTGCG TGCGAGCGAG CGCCGCCGAT CCGATCCGAT 
    CCGCTTCGCC GCCCTATGTG CCGAGGCCGT TCGAGGTAGG TGTCCCTCCA 
    ACTTCTACCT CAGCGCCCCT CTCCGTCGCA TCCAGGGACT CCGCCGCCGC 
    CGCCTCCGAT CCCAGCATCC TCGAATCCGA TGGTAAATGC AAGAAGCCAA 
    AGGGTAAGCA CAAGGTTGTA CTATTGGGCT TTTCGCGCAT CAAGAGATTT 
    CACTCTGTGG CATACCTTCA GCAAATATGG TGCTTTGAAG TGGTTGGAGA 
    GATCGATTTC AGCTTCCGTG TGTTAACCTA CAGCTTATAC TTCAGGATTC 
    ATCTCGGGAG GTTCTACAAG CGATTTGGAC GCCGAGCTTG CAGCACTGAG 
    CATGTCCATG GTTGGGACCA GAAGCCTGTT CGCTTCCAGC TCTCCACCTC 
    TGATGGGCAG CACTCATTAT CTCAGTGCTC CCTGGGTGAG CCCGGGAGCT 
    GGGTACTTTA CCATGCTGGC AATTTTGTGG TCTCAAAGCC TGACCAAACA 
    ATCAAGCTGA AGTTCTCGAT GGCTTAGATT GATTGCACAC ACACAAAAGG 
    TGGGTCTTTG TGTCGACTCG GCGTTCATAT ACCCAAAGGG CTTTCAGCAG 
    GAGAGGATGG TGAGGTCTCA GAAATGTAGA TGCTGACAAG GAACTTACAT 
    TAGATTGTAG ACAAATGCAG CTTGCAGCCT AATTCTATTT TTAATCTGGG 
    CTCATGTAGA CAAAGGTGTA TATAATTGTA GGCTTCAATT TTGTGTGATC 
    GGTAACATGG ATGTTCTCAT ATAATTAGTG TCTCCTTGAT TGTGC

    Gene models with high sequence identity

    1. AT1G12710.1 [+] show detail - phloem protein 2-A12
      E-value: 7e-41; Score: 164.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G12710.1

    Model type
    Protein coding
    Short Description
    phloem protein 2-A12
    Curator Summary
    This gene is predicted to encode a protein with a PP2 domain. This domain in present in lectins found in squash and cucumber, suggesting that this protein could potentially have carbohydrate binding capabilities.
    Computational Description
    phloem protein 2-A12 (PP2-A12); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: phloem protein 2-A11 (TAIR:AT1G63090.1); Has 458 Blast hits to 452 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 456; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR