K00627

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00627

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • increased length (PATO:0000573)
    (Rosette leaf::Shape::long)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • increased length (PATO:0000573)
    (Stem::Shape::long internode)
T2  
cauline leaf (PO:0000013)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00627

Determination of introduced cDNA(s)

  • J013119N07 - Rice Full-length cDNAs - Original: J013119N07

    full reading [+] show sequence

    Nucleotide sequence: J013119N07 - full reading
    TCCCTCTATC TGAGTCAGCT GCATCTCATC TGCATTCCTT CCTCGTGGCG 
    ATGACGATGG TACGCATCAT CGGCCCAAGT CCAGCTCAAT CCTCCTCACC
    AACACCAAGA CGACCACGAC CTCCTCGCCC TCGCCGCCGC CCACCGACCA
    TGGCCTCCGC CGCCGCTTCT TCCTCCAAAC CTCCCGTCGT GCTTGGCTGC
    GGCGCCGTCT CCGCGGACTA CCTCGCCACC GTCGCCTCCT TCCCCAACCC
    CGACGACAAG ATCCGAAGCC TAACGCTCAA GGTCCAGGGA GGCGGCAACA
    CTGGCAATGC CTTGACCGCC GCTGCTCGTT TGGGCCTTCG CCCAAGGATC
    ATATCCAAGG TATCCAATGA CCCACAAGGA AGAAATATTC TCAAGGAGCT
    GCAAGATGAT GGGGTCGACA CCTCTCATAT CCTGGTTGCA GAGGAGGGGA
    ATTCACCTTT CACCTATATA ATTGTTGACA ACCAGACGAA AACTCGTACT
    TGTATTCACA CTCCTGGTTA TCCTCCTATG GTCCCTGAAG AGCTCACACA
    AGAAAACTTG TTTGCCGCTT TAGACGGTGC TGACATTGTA TATTTTGATG
    TCAGATTGCA TGAAACTGCT TTACTAGTTG CTGAAGAGGC AAGCCAAAGA
    AAACTTCCTA TTTTGATTGA TGCCGAACGG AAGAGGGATG GATTGGACGA
    GCTTCTCAAT TTCGCATCTT ATGTTGTATG CTCTGCAAAA TTTCCTCAGG
    CTTGGACAGG AGCCTCATCA ACACCGGTTG CTTTGGTGTC CATGCTTTTA
    AGATTGCCTA ATATCAAGTT TATTATTGTA ACCCTTGGAG AAAAGGGATG
    CTTGATGCTT GAAAGAAGCA CAACAGATGC TTCTGAGGCA GAGGAAATAG
    ATGTAGAGAG TCTTCTGGAA TCACTAGAGA AGAAAGAAGT TTTGAGTTCA
    AGCATGCCAA AATGCATCGC CTCCAAGTCA AATTTGAGAA TAAGTGCAGA
    TGGAATAGGA TCCATCAGTG GCAGATTACT TTTAGGCACT GCCGAAATTA
    TACCCTCTGA AGAGCTCATA GATACAACTG GTGCGGGTGA TGCATTTATC
    GGAGCAGTTC TCTACGGTTT ATGCTCTGGC ATGCCGCCTG AGAAGATGCT
    GCCTTTTGCA GCTCAAGTGG CTGCTTGCGG GTGCAGGGGT TTAGGGGCTC
    GGACTGCTCT TCCCCATCGC ACAGATCCCC GCCTGGTTGC CTATTGACTC
    GAGGAACTGT AGTGTATCAA TCTGTGTTGG ATTTGATTGG GATGGATTCA
    TTGGATTGTG GGCGCCTTTG AAAAAGAAGA GATTAAGCAT TTGAAATATG
    GAGTAATAAG AAAGCCGCCT GCAGTTGAAA TCGGTTCCTA AGTTGTATGT
    AAACATTGAT TGTTGTTGCA TACTGTCAAT ATACCTTGGC TTGTGTTAAT
    AAGAGAGATT TGTGTGCTGT TGTTGCAAGG CCCAAGGTAC GAGTGATTGG
    TGGGTTCTTG TGATGTTAAA GAGCAACATT ACCCAATCAT ATACGGTCTC
    GTTGATTTTG TACCAGTGCA AAGTGAAATT ACCTACATTT TACCTAATTC
    AAAGAGTAAT TGATCTATAT TTATTTC

    Gene models with high sequence identity

    1. AT4G28706.3 [+] show detail - pfkB-like carbohydrate kinase family protein
      E-value: 4e-118; Score: 422.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Carbohydrate/puine kinase, PfkB, conserved site 0
    superfamily Ribokinase-like 7.4e-63
    HMMPfam Carbohydrate/purine kinase 1e-37
    FPrintScan Ribokinase 2.9e-08
    FPrintScan Ribokinase 2.9e-08
    FPrintScan Ribokinase 2.9e-08
    Gene3D no description 9.4e-52
    HMMPanther UNCHARACTERIZED 5.3e-178
    HMMPanther SUGAR KINASE RELATED 5.3e-178

    See the detailed result >

    AT4G28706.3

    Model type
    Protein coding
    Short Description
    pfkB-like carbohydrate kinase family protein
    Computational Description
    pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT5G43910.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR