K00627

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small) abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	increased length (PATO:0000573) (Rosette leaf::Shape::long) increased width (PATO:0000600) (Rosette leaf::Shape::wide) dark green (PATO:0001249) (Rosette leaf::Color::dark)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short) abnormal (PATO:0000460) (Silique::Others)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)
	stem internode (PO:0020142)	increased length (PATO:0000573) (Stem::Shape::long internode)
T2
	cauline leaf (PO:0000013)	dark green (PATO:0001249) (Cauline leaf::Color::dark) abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00627

Determination of introduced cDNA(s)

J013119N07 - Rice Full-length cDNAs - Original: J013119N07

full reading [+] show sequence

TCCCTCTATC TGAGTCAGCT GCATCTCATC TGCATTCCTT CCTCGTGGCG 
ATGACGATGG TACGCATCAT CGGCCCAAGT CCAGCTCAAT CCTCCTCACC 
AACACCAAGA CGACCACGAC CTCCTCGCCC TCGCCGCCGC CCACCGACCA 
TGGCCTCCGC CGCCGCTTCT TCCTCCAAAC CTCCCGTCGT GCTTGGCTGC 
GGCGCCGTCT CCGCGGACTA CCTCGCCACC GTCGCCTCCT TCCCCAACCC 
CGACGACAAG ATCCGAAGCC TAACGCTCAA GGTCCAGGGA GGCGGCAACA 
CTGGCAATGC CTTGACCGCC GCTGCTCGTT TGGGCCTTCG CCCAAGGATC 
ATATCCAAGG TATCCAATGA CCCACAAGGA AGAAATATTC TCAAGGAGCT 
GCAAGATGAT GGGGTCGACA CCTCTCATAT CCTGGTTGCA GAGGAGGGGA 
ATTCACCTTT CACCTATATA ATTGTTGACA ACCAGACGAA AACTCGTACT 
TGTATTCACA CTCCTGGTTA TCCTCCTATG GTCCCTGAAG AGCTCACACA 
AGAAAACTTG TTTGCCGCTT TAGACGGTGC TGACATTGTA TATTTTGATG 
TCAGATTGCA TGAAACTGCT TTACTAGTTG CTGAAGAGGC AAGCCAAAGA 
AAACTTCCTA TTTTGATTGA TGCCGAACGG AAGAGGGATG GATTGGACGA 
GCTTCTCAAT TTCGCATCTT ATGTTGTATG CTCTGCAAAA TTTCCTCAGG 
CTTGGACAGG AGCCTCATCA ACACCGGTTG CTTTGGTGTC CATGCTTTTA 
AGATTGCCTA ATATCAAGTT TATTATTGTA ACCCTTGGAG AAAAGGGATG 
CTTGATGCTT GAAAGAAGCA CAACAGATGC TTCTGAGGCA GAGGAAATAG 
ATGTAGAGAG TCTTCTGGAA TCACTAGAGA AGAAAGAAGT TTTGAGTTCA 
AGCATGCCAA AATGCATCGC CTCCAAGTCA AATTTGAGAA TAAGTGCAGA 
TGGAATAGGA TCCATCAGTG GCAGATTACT TTTAGGCACT GCCGAAATTA 
TACCCTCTGA AGAGCTCATA GATACAACTG GTGCGGGTGA TGCATTTATC 
GGAGCAGTTC TCTACGGTTT ATGCTCTGGC ATGCCGCCTG AGAAGATGCT 
GCCTTTTGCA GCTCAAGTGG CTGCTTGCGG GTGCAGGGGT TTAGGGGCTC 
GGACTGCTCT TCCCCATCGC ACAGATCCCC GCCTGGTTGC CTATTGACTC 
GAGGAACTGT AGTGTATCAA TCTGTGTTGG ATTTGATTGG GATGGATTCA 
TTGGATTGTG GGCGCCTTTG AAAAAGAAGA GATTAAGCAT TTGAAATATG 
GAGTAATAAG AAAGCCGCCT GCAGTTGAAA TCGGTTCCTA AGTTGTATGT 
AAACATTGAT TGTTGTTGCA TACTGTCAAT ATACCTTGGC TTGTGTTAAT 
AAGAGAGATT TGTGTGCTGT TGTTGCAAGG CCCAAGGTAC GAGTGATTGG 
TGGGTTCTTG TGATGTTAAA GAGCAACATT ACCCAATCAT ATACGGTCTC 
GTTGATTTTG TACCAGTGCA AAGTGAAATT ACCTACATTT TACCTAATTC 
AAAGAGTAAT TGATCTATAT TTATTTC

Gene models with high sequence identity

AT4G28706.3 [+] show detail - pfkB-like carbohydrate kinase family protein
E-value: 4e-118; Score: 422.00

InterPro Scan Digest

Program	Description	E-value
PatternScan	Carbohydrate/puine kinase, PfkB, conserved site	0
superfamily	Ribokinase-like	7.4e-63
HMMPfam	Carbohydrate/purine kinase	1e-37
FPrintScan	Ribokinase	2.9e-08
FPrintScan	Ribokinase	2.9e-08
FPrintScan	Ribokinase	2.9e-08
Gene3D	no description	9.4e-52
HMMPanther	UNCHARACTERIZED	5.3e-178
HMMPanther	SUGAR KINASE RELATED	5.3e-178

See the detailed result >

AT4G28706.3

Model type: Protein coding
Short Description: pfkB-like carbohydrate kinase family protein
Computational Description: pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT5G43910.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR