K00628

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00628

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • increased size (PATO:0000586)
    (Cauline leaf::Shape::large)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K00628

Determination of introduced cDNA(s)

  • J033067D07 - Rice Full-length cDNAs - Original: J033067D07

    full reading [+] show sequence

    Nucleotide sequence: J033067D07 - full reading 
    GAGCTGATAA TTAAAAGAGA GAAAAAAAAA AACTCGCCCC GTCGTTCCCT 
    CCTCAGCTCC TCTCCCCTCG GAAGTCGAAA CCCTAAGAAA CGCGTAGCGA 
    AGGCGAGGCT CCCGAGAGAG AGAGAGAGAG CCATGGCGGT GGCGGCGCCG 
    GGGCAGCTGA ACCTCGACGA GTCGCCGTCG TGGGGCTCCC GCAGCGTCGA 
    TTGCTTCGAG AAGCTCGAGC AGATCGGCGA GGGCACATAC GGGCAAGTGT 
    ACATGGCGAG GGAGACGGAG ACGCAGGAGA TCGTCGCGCT CAAGAAGATC 
    CGCATGGATA ACGAGCGCGA GGGCTTCCCC ATCACTGCAA TCCGCGAAAT 
    CAAAATCCTC AAGAAGCTGC ACCACCAGAA CGTCATCCAG CTCAAGGAGA 
    TCGTCACCTC GCCAGGACCG GAGAGAGATG AGCAGGGGAA ACCAATCCAT 
    GGTAACAAGT ACAAGGGGAG CATTTACATG GTCTTCGAGT ACATGGACCA 
    TGACTTGACT GGGTTGGCAG ATAGGCCTGG GATGCGTTTC ACCGTGCCGC 
    AGATTAAGTG TTACATGAAG CAACTCCTTA CAGGCCTTCA TTATTGTCAC 
    ATTAATCAAG TTCTGCATCG TGATATTAAA GGATCCAATC TCTTGATAGA 
    CAATGAAGGT AACTTGAAGC TGGCTGATTT TGGCCTAGCA AGATCATTTT 
    CAAATGATCA TAACGGAAAT CTCACTAATC GTGTGATCAC TTTGTGGTAC 
    AGACCTCCAG AGTTGCTGCT CGGAAGCACC AAGTATGGAC CAGCAGTTGA 
    CATGTGGTCT GTCGGTTGTA TTTTTGCAGA GCTTCTCAAT GGAAAGCCAA 
    TTCTGCCAGG AAAGAATGAG CCAGAGCAAC TGAGCAAAAT ATTTGATGTT 
    TGTGGCACAC CTGATGAATC AAACTGGCCG GGTGTCACAA AAATGCCTTG 
    GTACAACAAT TTCAAGCCTC CCCGCCAACT GAAGAGACGT GTAAAGGAGT 
    ACTTTAAGCA TTTTGACAGG CTTGCTCTGG ATCTGCTTGA AAAGATGTTA 
    ACACTAGATC CAGCACAGAG GATATCAGCA CAAGATGCAC TTGATGCAGA 
    GTATTTCTGG TCTGATCCCC TACCATGTGA TCCTAAAAGC TTGCCAAAGT 
    ATGAATCTTC ACACGAGTTC CAGACCAAGA AAAAACGCCA ACAAATGCGT 
    CAAGCCGATG AAGCTGCGAA GAGGCAAAAG ACACAACATC CTCAACCACA 
    TGGCCGTTTG CCTCCAATTC AACAAACAGG ACAGCCCCAT CCTCAAATCA 
    GACCAGGCCA GCCGATGAAC AACCCCCATG CGCCGATGGC TGCTGGGCCA 
    GGCCATCACT ATGCAAAACC CAGAGGGCCA GGAGGCTCAA GCAGGTATCC 
    ACAGGGTGGG AACCAAGGTG GAGGATATCC GAACCGCGGC GGACAAGGTG 
    GTGGTGGCAG CTATGGAAAT GCCCCTTACC CTCAACAAGG TCGAGGGCCG 
    CCGCCACCGT ACCCTGGCAG TGGAATGGCC GGAACAGGTG GCCCAAGGGG 
    TGGCGTTGGT GGTGGCTATG GAGGAGGATC AAATTATCCC CAGCAAGGCG 
    GCCCATATGG TCCTTCTGGC CCAGGCCGAG GGTCAAATTA TCCCCAACAA 
    GGTGGTTCTC GCAACCAGCA GCAGTACGGA AACTGGCAGT AGTACGTTAC 
    CTAAACTCAG CAACACTATG CCAATTGTCT TAAACTCTGA TGTTGATGCT 
    AACTTGTGCT TAATCTATTC TATTGGGCAT TACATTTTGT TAGAGCGTGT 
    ATTGCCCTGA ATCCAGTAGG AATTGTAGCA ATGTTGTTCG TTTTGATTAA 
    AGAATGATAA GAGATACACA AATTGAGC

    Gene models with high sequence identity

    1. AT5G10270.1 [+] show detail - cyclin-dependent kinase C;1
      E-value: 0; Score: 705.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein kinase-like domain 5.2e-89
    ProfileScan Protein kinase, catalytic domain 45.022
    HMMPfam Serine/threonine-protein kinase-like domain 6.9e-73
    Gene3D no description 0.00000000000023
    Gene3D no description 3.5e-69
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMSmart Serine/threonine-protein kinase domain 7.5e-97
    HMMSmart Tyrosine-protein kinase, catalytic domain 0.00000000075
    HMMPanther CYCLIN-DEPENDENT PROTEIN KINASE-LIKE 1.1e-158
    HMMPanther CDC2, MAP KINASE-RELATED 1.1e-158

    See the detailed result >

    AT5G10270.1

    Model type
    Protein coding
    Short Description
    cyclin-dependent kinase C;1
    Curator Summary
    Encodes CDKC;1, part of a CDKC kinase complex that is targeted by Cauliflower mosaic virus (CaMV) for transcriptional activation of viral genes. Also regulates plant growth and development.
    Computational Description
    cyclin-dependent kinase C;1 (CDKC;1); FUNCTIONS IN: kinase activity; INVOLVED IN: response to virus, leaf development; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cyclin dependent kinase group C2 (TAIR:AT5G64960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR