K00644

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00644

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00644

Determination of introduced cDNA(s)

  • J023001K24 - Rice Full-length cDNAs - Original: J023001K24

    full reading [+] show sequence

    Nucleotide sequence: J023001K24 - full reading 
    GAGTTTTTGT AACACCTCTT CGATTCATAT CCGGATTCCG ATTTACACCA 
    AACCCTGTCC ATATATATAT AAGCTATACT AATAACGATC ACGGAGATAA 
    ACACTCCACA AATCTGGGCA GCCGCCGCGC CACGAGCACG AGCACGACAC 
    GACACGTTAT CCATCCCGCC GCCGAAGATC GCCGCACGCC GGAGCGCCGA 
    TCGATCGGTG GAGATGGTGC TCGCGCAGCT GGGCGGGAGC ATCTCCCGCG 
    CGCTGGCGCA GATGAGCAAC GCGACGGTGA TCGACGACAA GGCGTTCGCC 
    GACTGCCTCC ACGAGATCGC GCGCGCGCTC CTGCAGTCCG ACGTGCAGAT 
    CAGGATGGTC TCCGACATGC GCGCCAACAT CCGGAGGGCC GTCAACCTCG 
    ACGCCCTCCC CGCCGGCACC AACAAGCGCC GCATCATACA GCAGGCCGTC 
    TTCGCGGAGC TCTGCAACAT GCTTGATCCG GGGAAGCCGT CCTTCACCCC 
    CACCAAGGGG AAGCCCAGTG TGGTCATGTT CGTCGGCTTG CAAGGTTCTG 
    GGAAAACCAC TACCTGTACC AAATATGCTC ACTATCATCA GCTGAAGGGC 
    TTTAAACCTT CATTGGTTTG TGCTGATACA TTCAGAGCTG GTGCCTTTGA 
    TCAGTTAAAA CAGAATGCTA CAAAGGCCAA GATTCCTTAC TATGGAAGCT 
    ACATGGAATC AGACCCAGTG AAAATTGCTG TTGAGGGTGT GGAGAGGTTC 
    AGGAAGGAGA AGTCTGATCT CATCATTGTT GATACTAGCG GGCGCCACAA 
    GCAAGAGGCT GCACTCTTCG AAGAAATGCG TCAAGTTGCA GAAGCAACGA 
    AACCTGACCT TGTGATATTC GTGATGGATG GTAGCATTGG TCAGGCAGCG 
    TTTGATCAGG CGCAAGCATT TAAACAGAGT GCTTCTGTTG GTGCTGTGAT 
    TGTTACGAAA TTGGATGGTC ATGCCAAAGG AGGCGGTGCA CTTAGCGCGG 
    TTGCAGCTAC AAAGAGCCCT GTTGTATTTA TTGGAACTGG AGAACACATG 
    CAGGATTTTG AGGTTTTCGA TGTGAAACCA TTTGTTAGTC GTCTGTTAGG 
    AATGGGAGAC TTGTCTGGCT TAGTGAACAA GATCAAAGAT GCTATGCCTG 
    CTGATCAACA ACCTGAGCTT ATGCAGAGAC TGATAGAAGG AACCTTTACT 
    CTCAGAGTAT TCTACGAGCT GTTCCAGAAT CTTCTTAACA TGGGTCCTAT 
    TGGACAGGTT TTATCTATGA TACCTGGATT TAGGTCTGAA CTGATGCCAA 
    AAGGACATGA CAAGGAAAGC CAAGCAAAGA TTAAGCGGTA CATGACTATT 
    ATGGATTCTA TGACAAATGC AGAGCTTGAT AGCACAAACC CAAAGCTGAT 
    GAGTGAATCA CGAATTAAAC GGGTCGCTCG AGGATCTGGC AGGACCATGA 
    AAGATGTGAC CGACATGCTG GAAGAGTACA AGAGAATCGC CAAGGTGTGT 
    AGCAAGTTGA AGAAGAAGTT GCCCAAGAAT ATGGACAGGA ATGTTATGAA 
    CAACAAGGAC ACGCTGAACA CCATTAACAA TCTCATCCCT AAGCAATTGT 
    TGAATCAGAT CGGTGGTGTT AATCCGTTGC AGAGCGTCAT GAAGCAAATG 
    GGCTTAAAGA CATGAACGAA ATGTTTTGGG AGCATGTGCT GATGTTAATT 
    GATATTTGCA AATATATATG ATGGGCTTGA TGCAAACACT CGGCTAACAT 
    TGAGGGCCTG GTTTTCAGTG GGATATCGGC ATTTAAAGTA TTTTTTTTCT 
    TCATGCTGAA TGGAGGAAGT AGTAATATTA ATTTTGCTGA AATTTATGTC 
    AATTCAGTCA ATCAATAGTT AGCGTACCCT CGTAAGGGGC ATTTAAAGTA 
    TTTTTTTTCC TTCATGCTGA ATGGAGGAAG TATTGGGCAC AATGTTTCTC 
    TTAAACTGAC AAAGGTCATC GATTGGTATT GATGCGCATT TGCGTTCGCG

    Gene models with high sequence identity

    1. AT1G48900.1 [+] show detail - Signal recognition particle, SRP54 subunit protein
      E-value: 0; Score: 666.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Signal recognition particle, SRP54 subunit, GTPase 0
    HMMTigr Signal recognition particle, SRP54 subunit 0
    HMMPanther SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN 1.1e-238
    HMMPanther GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITIO 1.1e-238
    superfamily P-loop containing nucleoside triphosphate hyd 1.9e-65
    superfamily Signal recognition particle, SRP54 subunit, M-domain 3.5e-40
    superfamily Signal recognition particle, SRP54 subunit, helical bundle 3.3e-18
    HMMPfam Signal recognition particle, SRP54 subunit, GTPase 1.1e-74
    HMMPfam Signal recognition particle, SRP54 subunit, M-domain 2.8e-26
    HMMPfam Signal recognition particle, SRP54 subunit, helical bundle 1.2e-11
    Gene3D Signal recognition particle, SRP54 subunit, helical bundle 2.3e-17
    Gene3D no description 2.4e-64
    Gene3D Signal recognition particle, SRP54 subunit, M-domain 1.1e-27
    HMMSmart ATPase, AAA+ type, core 1.3e-05

    See the detailed result >

    AT1G48900.1

    Model type
    Protein coding
    Short Description
    Signal recognition particle, SRP54 subunit protein
    Computational Description
    Signal recognition particle, SRP54 subunit protein; FUNCTIONS IN: 7S RNA binding, mRNA binding, nucleoside-triphosphatase activity, GTP binding, nucleotide binding; INVOLVED IN: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, M-domain (InterPro:IPR004125), Signal recognition particle, SRP54 subunit (InterPro:IPR006325), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897); BEST Arabidopsis thaliana protein match is: Signal recognition particle, SRP54 subunit protein (TAIR:AT5G49500.1); Has 17579 Blast hits to 17572 proteins in 2934 species: Archae - 472; Bacteria - 10667; Metazoa - 363; Fungi - 296; Plants - 287; Viruses - 1; Other Eukaryotes - 5493 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR