K00716

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00716

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00716

Determination of introduced cDNA(s)

  • J013005I15 - Rice Full-length cDNAs - Original: J013005I15

    full reading [+] show sequence

    Nucleotide sequence: J013005I15 - full reading 
    GGAATTCCAG TAACTTTCCT CTCATCTCTC ACAGAAAAAA CATTCCTCTC 
    ATCTCCAATC AGCAGCTATC TCCCTTCCTC ATCACCAGCT TGCTGTGATC 
    TTATCAGGCC TTTTTGTTGT TCTGCTGGTC TTGCTCGCGT GCAAAGAGAT 
    GCCGGAGCAC TCTGAGAATG CGGCTGCGAA CATTGTGGAC AGCATAGTGG 
    ACGCCATTGC CGACAATCTT CCCAAGCAGA AGTCAGTCAG ATTTGAAGAT 
    GGCTCAATCT CTGATCAAGC TAAGAGACTC TTCGGTGGTC AGAAGTCTGT 
    CCATCATGTT TTGGGTGGTG GAAAATCCGC CGACGTGTTG TTGTGGAGGA 
    ACAAGAAGAT ATCTTCAAGT GTTCTTGCAG TTGCAACGGC TGTCTGGGTT 
    TTCTTCGAGT GGCTCGACTA CCACTTCCTG ACGATTGCTT GCTTTGTTCT 
    TGTTCTTGGC ATGGTTGTCC AGTTTGCATG GTCCACTTTT GCAGGCATGC 
    TAAATGGGTC ACCTTCGAAA GTTCCTCGCG TCGAATTGCC GGATGAGCTG 
    TTCGCAAACA TTGGTTCTGC AATTGGCACC CAAGTGAACA AGTTCTTGGG 
    CACTCTTCAG GATGTGTCTT GTGGAAGAGA CCTGAAGAAT TTTCTCCTGG 
    TGATTGCCGG GTTCTTCGCG GCCGCTATCA TTGGGAGCTG GTGCAATCTC 
    CTCACTGTCA TTTACATTGG ATTTGTGTGT GCTCACACTC TCCCGGTGCT 
    GTATGAGAAG AACCAAGAAA AAGTGGACGA GTTCCTGTAC AACACACTTG 
    GCCTGCTTCA GAATCAGTAT CAGAAACTTG ACAAGGGTGT CCTGGGCAAG 
    GTGCCCAAAG GGATCATCAA GCTTAAGAAG AGCGATTAGT TTCACTAGCT 
    GCTGCTGCTG CTAATGCTGC GTACAGTCAA TCAGAATACT GCGTAATTTG 
    GACAGATGTT AGCTTCCCCT GAACAGTTAA TTGTGTACAG TATTGGAAAA 
    CACCGTGTCA GTGATGCTAG TGGTATACTC CTATATTGTA GGCCAAATTC 
    ATCAGTGGCA GATTGTTTCA GCTAGTCTCA TGTGTTTTGC CCATGAGAGA 
    AATTGGGAAA AAAAATAAAA GGTGATTTGT G

    Gene models with high sequence identity

    1. AT3G10260.3 [+] show detail - Reticulon family protein
      E-value: 9e-64; Score: 241.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Reticulon 44.687
    HMMPfam Reticulon 2.2e-49
    HMMPanther RETICULON-RELATED (PLANT) 2.7e-79
    HMMPanther Reticulon 2.7e-79

    See the detailed result >

    AT3G10260.3

    Model type
    Protein coding
    Short Description
    Reticulon family protein
    Computational Description
    Reticulon family protein; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT3G61560.1); Has 1060 Blast hits to 1060 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 591; Fungi - 0; Plants - 458; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR