K00718

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00718

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00718

Determination of introduced cDNA(s)

  • J023131F13 - Rice Full-length cDNAs - Original: J023131F13

    full reading [+] show sequence

    Nucleotide sequence: J023131F13 - full reading 
    GGGTGGTGGA CTGGTGGCTG CAGCTGTTCC TCATCGCCAT TCCAATCCAA 
    TCCAATGGCG CTCACCAACC ACATCCTCGC GCCGGCAGCC GCAGCAGCCT 
    GCTGCTTCGG ACGGCGGGTT CCTCTGCCGC CGCCTCATCA GCTCGCCGTG 
    CGGAGGAAGC AAAAGAGCGT GGTGGTGGCC ATGGCCGACC TGCTGGGCGA 
    CTTTGGCGCG CGCGACCCCT TCCCGGAGGA GATCGAGAGC AACTTCGGCG 
    AGAGGGTGCT GGGCAACGTC GACACCCTCC ACAACATCCT CATCCCCACG 
    CTCTCCGTGC TCTCCATCGC GCGCCTCCCC CTCGAGCCTA ACCCCGCGCC 
    CGTCGACGCT GCCGACGCCC GCCGCCTCCT CCACAAGGTG GTTGGCTGGC 
    GCCTCCTCGA CGACGCCGAC GGCATGCGTC TGCAGTGCGT CTGGAAGGTC 
    AGGGACGAAG CCTGCGGCCA CGAGCTCGTC GCCAGGATCA ACGCCGCGGT 
    TGACGGCGCC CCGGCCACCG TCGTCTTCGA GGCCCCCAAC CAGGTCAGGG 
    CCGAGCTGCA GACGCCCTCC GCCGGCGGCC TCACCGTCAA TGACTTCATC 
    GTCGCGGCTC GCATAGACAA GGTCAAGACG GTCGACCTTA TCCCCAAGAA 
    GAGAGTCTGG GCCTGATTCT TCATTCACAT ATATCCCCTT AATCAATCAA 
    TCAACCAATC AATCAATTAG TAGTATCTTT TTTTTGGCTT TCAATCGCTT 
    GTGGAGTAGT ACACTACTAC GGAGTAGTTG TTGTTTTGAA TTTATAAAAT 
    ATTTAGTAGT CTTTCAAAGC AAAGGCACCG GCAGAATTTG TGCCCAAAAC 
    CAAAAAACAA ATAAAAAGGG ATGATATGAT ATT

    Gene models with high sequence identity

    1. AT5G51110.2 [+] show detail - Transcriptional coactivator/pterin dehydratase
      E-value: 6e-45; Score: 177.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Transcriptional coactivator/pterin dehydratase 0.000053
    superfamily Transcriptional coactivator/pterin dehydratase 0.0000000035
    HMMPanther Transcriptional coactivator/pterin dehydratase 2.7e-17
    HMMPfam Transcriptional coactivator/pterin dehydratase 0.00000007

    See the detailed result >

    AT5G51110.2

    Model type
    Protein coding
    Short Description
    Transcriptional coactivator/pterin dehydratase
    Computational Description
    Transcriptional coactivator/pterin dehydratase; FUNCTIONS IN: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; INVOLVED IN: tetrahydrobiopterin biosynthetic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional coactivator/pterin dehydratase (InterPro:IPR001533); BEST Arabidopsis thaliana protein match is: Transcriptional coactivator/pterin dehydratase (TAIR:AT1G29810.1).
    Link
    InterPro Scan - TAIR