K00718

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00718

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00718

Determination of introduced cDNA(s)

  • J023131F13 - Rice Full-length cDNAs - Original: J023131F13

    full reading [+] show sequence

    Nucleotide sequence: J023131F13 - full reading
    GGGTGGTGGA CTGGTGGCTG CAGCTGTTCC TCATCGCCAT TCCAATCCAA 
    TCCAATGGCG CTCACCAACC ACATCCTCGC GCCGGCAGCC GCAGCAGCCT
    GCTGCTTCGG ACGGCGGGTT CCTCTGCCGC CGCCTCATCA GCTCGCCGTG
    CGGAGGAAGC AAAAGAGCGT GGTGGTGGCC ATGGCCGACC TGCTGGGCGA
    CTTTGGCGCG CGCGACCCCT TCCCGGAGGA GATCGAGAGC AACTTCGGCG
    AGAGGGTGCT GGGCAACGTC GACACCCTCC ACAACATCCT CATCCCCACG
    CTCTCCGTGC TCTCCATCGC GCGCCTCCCC CTCGAGCCTA ACCCCGCGCC
    CGTCGACGCT GCCGACGCCC GCCGCCTCCT CCACAAGGTG GTTGGCTGGC
    GCCTCCTCGA CGACGCCGAC GGCATGCGTC TGCAGTGCGT CTGGAAGGTC
    AGGGACGAAG CCTGCGGCCA CGAGCTCGTC GCCAGGATCA ACGCCGCGGT
    TGACGGCGCC CCGGCCACCG TCGTCTTCGA GGCCCCCAAC CAGGTCAGGG
    CCGAGCTGCA GACGCCCTCC GCCGGCGGCC TCACCGTCAA TGACTTCATC
    GTCGCGGCTC GCATAGACAA GGTCAAGACG GTCGACCTTA TCCCCAAGAA
    GAGAGTCTGG GCCTGATTCT TCATTCACAT ATATCCCCTT AATCAATCAA
    TCAACCAATC AATCAATTAG TAGTATCTTT TTTTTGGCTT TCAATCGCTT
    GTGGAGTAGT ACACTACTAC GGAGTAGTTG TTGTTTTGAA TTTATAAAAT
    ATTTAGTAGT CTTTCAAAGC AAAGGCACCG GCAGAATTTG TGCCCAAAAC
    CAAAAAACAA ATAAAAAGGG ATGATATGAT ATT

    Gene models with high sequence identity

    1. AT5G51110.2 [+] show detail - Transcriptional coactivator/pterin dehydratase
      E-value: 6e-45; Score: 177.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Transcriptional coactivator/pterin dehydratase 5.3e-05
    superfamily Transcriptional coactivator/pterin dehydratase 3.5e-09
    HMMPanther Transcriptional coactivator/pterin dehydratase 2.7e-17
    HMMPfam Transcriptional coactivator/pterin dehydratase 7e-08

    See the detailed result >

    AT5G51110.2

    Model type
    Protein coding
    Short Description
    Transcriptional coactivator/pterin dehydratase
    Computational Description
    Transcriptional coactivator/pterin dehydratase; FUNCTIONS IN: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; INVOLVED IN: tetrahydrobiopterin biosynthetic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional coactivator/pterin dehydratase (InterPro:IPR001533); BEST Arabidopsis thaliana protein match is: Transcriptional coactivator/pterin dehydratase (TAIR:AT1G29810.1).
    Link
    InterPro Scan - TAIR