K00720

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00720

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00720

Determination of introduced cDNA(s)

  • J023019J18 - Rice Full-length cDNAs - Original: J023019J18

    full reading [+] show sequence

    Nucleotide sequence: J023019J18 - full reading 
    GACTCACTCT CACACACACT CTCATCTTCT TCATCGCAAG CTAGTAAGAG 
    TGAATCGAAG ATGATGAAGA AGCTGGTGAG GTTGCTGATC ATGGTGGAGG 
    TGGTGGCCAT GGCGGCGGCG CCGCGGCGAG CGGCGGCGCT GAGCATGGAC 
    TACTACGGGA TGAGCTGCCC GTTCGCGGAG ATGGTGGTGA GGAGCGTGGT 
    GAGCCAGGCG CTGATGGGCG ACCCGTCGCT CGCCGCCAGC CTCCTCCGCC 
    TCCACTTCCA TGACTGCTTC GTCCAGGGCT GCGACGCCTC CGTCCTCCTC 
    GACTCCACCC CGGACAACAC CGCCGAGAAG GACGCGCTCG CCAACAAGAG 
    CCTCCGCGGC TTCGAGGTCA TCGACCGCAT CAAGGACGCC CTCGAGTCGC 
    GGTGCCCCGG CGTCGTCTCC TGCGCCGACG TCCTCGCCCT CGCCGCGCGC 
    GACGCCGTCA TCATGGCGGG GGGCCCGTAC TACGGCGTGG CGACGGGGAG 
    GAGGGACGGG ACGCGGTCTA GCGCGGCCGA CACGGTGGCG CTGCCGCCGC 
    CGTTCTTGAA CGCGACGGCG CTGATCCAGC TGTTCGGGAC GCACGGGTTC 
    ACCGCGCAGG ACATGGTGGC GCTGTCGGGG GGGCACACGC TGGGGCGGGC 
    GCACTGCGCC GACTTCAAGA ACCGGGTGGC GACGGAGGCG GCGACGCTGG 
    ACGCGGCGCT GGCGTCGTCG CTGGGCAGCA CGTGCGCCGC CGGCGGGGAC 
    GCCGCGACGG CGACGTTCGA CCGGACGAGC AACGTGTTCG ACGGGGTCTA 
    CTTCCGCGAG CTGCAGCAGC GGCGGGGCCT GCTGACCTCC GACCAGACGC 
    TGTTCGAGTC GCCGGAGACG AAGCGGCTGG TGAACATGTT CGCCATGAAC 
    CAGGCATACT TCTTCTACGC GTTCCAGCAG GGGATGCTCA AGATGGGGCA 
    GCTCGACCTC AAGGAGGGCG ACGCCGGCGA GGTCAGGACA TCTTGCAGGG 
    TCGTCAACTG ACACTCCTTG ATCATACCAA CAATCTATAT GTCCTGAATT 
    GCCCGCCTTA GCTCTTTAGC TTAAGCTTTT GAGTTTAACT GGTTGGTGCA 
    TGCAACTCAA TAATAACATA CCGTATACTC GACGTCTTTC GTGGCCGCGT 
    CTTTGTGAAC TTAAAATTGC AGCTAGCTAG TTTGCCGGAA ATGCTACAGT 
    ACCCAAGGTA TACAAGTAGT GTCAGTTTGT ATTGTGGCAT GGAGGCCATG 
    TATGATAGTA GTAAGTATAG TAAGCTTGCC AGAAATGCTA CAGTTAGCAG 
    CTGGTATAAT TGTGGTACTG TATAGGAAAG ATTGTAAAAC AATCATGCAT 
    GTCACTAGTT TAGATATGTA TGCATGTACA ATAATATTGT GATGCTCC

    Gene models with high sequence identity

    1. AT4G33420.1 [+] show detail - Peroxidase superfamily protein
      E-value: 7e-82; Score: 301.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Peroxidases heam-ligand binding site 0
    PatternScan Peroxidase, active site 0
    ProfileScan Haem peroxidase, plant/fungal/bacterial 74.112
    FPrintScan Plant peroxidase 1e-54
    FPrintScan Plant peroxidase 1e-54
    FPrintScan Plant peroxidase 1e-54
    FPrintScan Plant peroxidase 1e-54
    FPrintScan Plant peroxidase 1e-54
    FPrintScan Plant peroxidase 1e-54
    FPrintScan Plant peroxidase 1e-54
    FPrintScan Plant peroxidase 1e-54
    FPrintScan Plant peroxidase 1e-54
    FPrintScan Haem peroxidase, plant/fungal/bacterial 3.8e-32
    FPrintScan Haem peroxidase, plant/fungal/bacterial 3.8e-32
    FPrintScan Haem peroxidase, plant/fungal/bacterial 3.8e-32
    FPrintScan Haem peroxidase, plant/fungal/bacterial 3.8e-32
    FPrintScan Haem peroxidase, plant/fungal/bacterial 3.8e-32
    Gene3D no description 1.5e-58
    HMMPfam Haem peroxidase, plant/fungal/bacterial 1.7e-76
    superfamily Haem peroxidase 2.6e-104

    See the detailed result >

    AT4G33420.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Computational Description
    Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G51890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR