K00726

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	stem (PO:0009047)	increased thickness (PATO:0000591) (Stem::Shape::thick) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00726

Determination of introduced cDNA(s)

J023062M02 - Rice Full-length cDNAs - Original: J023062M02

full reading [+] show sequence

TTTGTAAATA CTGAATAACC GATGCAATTT TCGATTGGAT GAAACTGAAT 
GTTCCATGCA CTCCTGCAGT CCTGCTCACT ATCGCGACTG AGTATTTCTT 
TGTAGTTATA ATGACATTGC AATCAAGTAG AAATATCCAT TAGCTAAATC 
TTGACTTAGC TGCCTACCTA ATTTGTTTGC AACATGCATC ATCCACCAAA 
TTTAAATAGC AAATCTGACT AGGTAGATTA CAAGTTTTTG TGCTTTCTAG 
ATTTACACTC CCGAAGGAAA ATCTCCGATT GGCTATCAAG GACCCATGTT 
AGTATGCAAA TGTAAAACTG CAACCTATTT CCGATTAAAT CCAATGATTT 
TCTACTATGC CATCTAATAA TTTCTCAATT CAATTTTAAG TTCCTTTCTA 
CAACATTTTG CATCTTATGG TAGGGTTAGA TTTTATACCA AGGTGTGGCC 
TTTTCTGCCC AGGTGAGTAT TTCTGCATCT ATCTTGCTCC TCCGGAGCAG 
ATAAACACTT TATTCCTTCA CTTTCATTAC TCTCTCTTTC AAATCCAGCT 
TATTAGAGTC CTTTTCATTC AACAGGGTCA TGCATGGTGG ATGTATGTAT 
GGTTTCAGTT CATGATTTTG GATGAATAAA TTAAGTTTAG GTTCTTTATT 
GTAGCCTTGT CTCATGCATG AGTGGGGATC ATGGGGTCTC GCTCCAATGG 
TGCTTCAAAC AGCATATGTA GGGGGTTATT TTTGCCCTTA TTTTTTTTAA 
TCTTCCTTCC TCTTTGTGTA AAAATGTAAG ATACGTCTCA AAATATATTG 
TTTCTATTTG GTCATCAGCC TTTCCCTTGT TTGCTAAACG AATAGTATGT 
CATCAGCCTC GCCGTGTCAT CTCGATGGCT TGCATATATA CGAGGATGCG 
GGAAGGGCCT GTTACTGTAG GGGTGCCATA ATTGGATTGG ATTTCTTTTA 
CCTTTACAGA ACAATATTTT TGAACAAAAG GAATATTACT TTATTTTGAT 
ATCATCTTTT CTTGTATTGT AGGTTTTGGA TTCTCAAACT CGTAGCGTTT 
GTTGTCTACG TTTGGACGAA GCGTCGCTCA TCTTTTCATT TTATTCTTGC 
CTCTGAAGAT AGGTACTGTG CCAATGAAGA TACATGTTTG TGTGCTAGCT 
AAATCACGCT TATGCATTTA TGCATGGTTA ATTACATTGT TTGCTCTGTT 
AATCTACACA ACCTGATGGC ATTCTCTGCA ATCTTAAGGG ATTTATAGTT 
TTATGCATGA TTATGCTTTT CAGATCTTTA GTAAAAAATG CTCGCCAGGG 
ATTTAATAAG AAATGCTGGA GCACTAATTG ATCCTCTGCT CCATTTGATC 
AAATAGTACT GTCCATTTAT GCCTACACTT TTCTGATCTC ATAGTATTGT 
GTCAAATAAA TTTGATATGT AGCTTTGGTG TCCTTAAATG GCATGGTTGT 
TTTATACGTC CCTGTGATTT TCCATGTCAT GATTTGTTGT TACCATTTCA 
TTGAATGCTT TGCTGTTAAT GATCGCTTAA CAATCAGTAG GCTCCGTTGG 
ATTTGTGCGG ACTCATAAAG AAGAGGTGCT TGTGTTTGCT GGTTCATCAA 
ACAGCTCCAT CAAAGCGGTA GGGCGTGGGA TAAGCCAAAG GTTTGGCTGT 
GCTGCTACTA CTACTAACAT CCATTGACAT TCACTATTTT GAAGATCAAT 
AGTACTATTT TTATTTTCGG ATCAGCGGTA GGGTTCTGGA CTTAAATTGC 
CGATCAAATG ATTTGCGGAT GCAAATAATG AATTTCCATA TGTAGACCTG 
TAGTGGGCCG TATGATAATA ATATATTTGG TATATTGCAG AAATGGCTTT 
GTAGTAAAAA TTGCTCATAT AATTAAGTTG TCAAATTATG TGCACCGACA 
ATACACCTGA TTTATCTACA ATAACAGGTA ATGCCTGATT TGTCTACAAT 
AACAGGTAAT GATGTGCCGA ATTGCTCTTC AGATTCTTCA TCCGATGTTA 
TCATGTTTTT GTCAAGTGAA TAAACTAAAA CTGTATGACA ACAGTTACGT 
GTTGAATCAA CTAAATTTCT GACAGTAGAT GTTCTTAAGT GCACAACCTA 
AAATTTCTTT AATTCATAAG AACATGTAAC CACATTAGGT ATAAAGTTTG 
CAAGATATCA ATCTTGATGG CCTGTTGCTG CTAGGTGTAT GCATTAATTC 
TGGTGCGCTG GATGTAGTTT GCTTGCCTCT AGGATTATAT GATAAGTTAG 
ATGTATTTTG TTGGCCTGCT GGATGTATGC ATTCAGCTCC TGACTTATTC 
TTGATTTATT TGTGCATGCC GGATCCATGG AAGTATCAAC CCACTAAAGT 
CTGAACTCTG AAATAAGGCT TTTGGTATAC TGTGGCCTAT ATATTCTGCA 
CGTCATAGAG CTTTCATGTC ACAATATATG TGCAGGTTAG CACTGGATGG 
AAATTAATAC CTCATTTGTT TTCTATCTTT TCAACAACTT TGCTCAGGGT 
TGGTATAAAT CACCACTTAA GCAACTTTGT GATGGCATCC ATCTAGCCCT 
ATGGCAGTTA CATAGAGGAA TAACGATGCA TTTATCTGCT TATCTTATGT 
AAGTGAAACG ATCTGGTGGG TACAAATGAT TATATGATTA TGTTATTCTC 
CAAGTCAATA TCTTGGATGA TCTTATGCTG CTTTTAGTCT GCAGGCTTCG 
GGGAAGGTTG AGGATTCAAG CCGTGGTCAA GAGATTTTTT TTTTTTTGTG 
CTTATATTGT TTGACAAAAT AGATATTTGG TTGTAGTGCT GACAAAAATG 
TTTGATATAG CATTTTCTTG ATTCATGTAG ATTGACAATT GATTTCACAA 
GTAAATGAAA TAGTATATGT TTTAGACATT TAGTACACAC GCTATTATCT 
ACTGAGGAGG TGTTTTCACA GCTTATCTAC AATGACTCCA ATTTTAAATT 
CAACATTATA GCTACTATGC TAGATTAAAG AGGGTAGTGA ATATCTGCTC 
AGAAATATTT TTGTATACTC GTTTTTATTT TATGCCGAAA TTTTTGTATT 
GATGTCTCAC TGAAATTGTT TATATATAGG AATCATATAT TTATTTTCAC 
TATGAATTCC TTGATTTATC CTGCACTTTC TTCAGAAATT TGGGTCTAAT 
ACTCTAATTT CTTTTGAATC CTACTGTTAC TTGGGCACTG TTGAGAAGGG 
AGGGTGTTGG AACTGCCATG GAGGCCGAGC TCCAAGCGGT CTACGCGTAT 
TCATTGCCAA GATCGGTCTC AAGCTGCAAT TGTGGAGGTT TACATATTAA 
CTACCATCCT ACGGGCCTGT TAGGTGTTGT ATCAATAGTT TTTTTAGTTA 
ACCCAAATGT CAGGACTGAT TGATTATGTA AAACTAAATT ATTTTTAGCT 
TTGTTTTGTC AGTGCTAAAT ATGGTGATTG ATGCGATCCG TAACTTTGGT 
TATTGCAATG TAAGATAGCA ATTGATATAT GGAGACAATA TATAATGCAT 
ATACAAAATT AGATTTTTGC

Gene models with high sequence identity

Not founds.

InterPro Scan Digest

See the detailed result >

J013148M09 - Rice Full-length cDNAs - Original: J013148M09

full reading [+] show sequence

GGTTCCCTTG CTACACTGAC ACACATCCTC GATGGCCACT TATCTCCAAT 
CAGCAGGCCT CACCGCCGCC ACTGCCAGCA CCAGCCGCCT CCTCCGGCCA 
ACACCACGGA GGCTGCTCCT CCTCGTGGCG GCGTGCTCCA CTGGCGGACG 
GAGATCAGCC TGCCTCTCCG TCGGCCTCGC AGCCGCCGCC GCCACCATCT 
TCCAGCATCA TCCCGCCTGC GCCGCCACCG ACGACGAGCC GGCAAACAAT 
GGGTGGTGGC TCACCGAGTT CCCTTTGCCG GTGCCAAAGA TTGTCAACAA 
GGAGCTGAAC AATGGCGAGA CGGGGAGCCG GACGTTCGTG AGGAACGGCA 
TCTACATAGC CGACATCGGG CCGAGCTACG CGGCGCACGC GTACAGGCTG 
CGGAGCACGG CGTTCGACCT GCTGGCGCTG GAGGACCTGC TGGGCAACAA 
CGCCGACAGG GCCAACTACG TCACCAAGTA CCTCCGCCTC AAGTCCACCT 
TCATGTACTT CGACTTCGAC AAGCTCATCT CCGCCGCCTC CGACGACCAG 
CGCCCCCCGC TGCTCGACCT CGCCACCCGC CTCTTCGACA GCTTCGAGCG 
CCTCCAGAAG GCCTGCGGCA CCAAGGACGA CACCCAGATC GGCTCCTCCT 
ATGCCGACAC CAAGATCATC CTCCAGGAGG TCATGGCAAA GATGGCCTAG 
TGTTTCTGTT GGTGTACTAG CTAGTACTGT ATTTCTCTCA CTTTACTTGT 
CATACATACA TATATATATA TATATATATA TCCTCCTCAT C

Gene models with high sequence identity

AT3G01440.1 [+] show detail - PsbQ-like 1
E-value: 2e-39; Score: 159.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Oxygen-evolving enhancer protein 3,	4.4e-28
ProfileScan	Coagulation factor 5/8 type, C-terminal	8.502
HMMPfam	Photosystem II oxygen evolving complex protein PsbQ	2.2e-63
Gene3D	no description	2.7e-30

See the detailed result >

AT3G01440.1

Model type: Protein coding
Short Description: PsbQ-like 1
Curator Summary: Encodes a subunit of the NAD(P)H complex located in the chloroplast thylakoid lumen.
Computational Description: PsbQ-like 1 (PQL1); FUNCTIONS IN: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity; INVOLVED IN: photosynthesis, light reaction, photosynthetic electron transport chain; LOCATED IN: in 7 components; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbQ (InterPro:IPR008797); BEST Arabidopsis thaliana protein match is: photosystem II subunit QA (TAIR:AT4G21280.1); Has 165 Blast hits to 165 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR