K00737

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00737

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00737

Determination of introduced cDNA(s)

  • J013095J23 - Rice Full-length cDNAs - Original: J013095J23

    full reading [+] show sequence

    Nucleotide sequence: J013095J23 - full reading
    GCTTGGACTT CCACTGTATC GCACAAGTGG AGATGACTCT GTGCTGTTTG 
    ATCATGACCT TGAGAGTTAT GCTCTCTATG ACACTAAGGG CCATCAAGTT
    CCCCAAGAGC TGGTAGAAAA GATAGGGAAG GTTTTTGAGA CTATATTGGA
    AGAGACTGGC AAACTGAGGG AAGAAACTAA GGAAGACATT TCTATTGCGA
    AGGCCATTGC AATTGTTATG GAGAGAAATC CACACTTGAG GCAAGAAGGG
    ATTGCTCATG ATGTTCTTCA GTGGTATTTG TGCCGCATGG AAGGTTGGTT
    TGCTACTGAT GCGGACGCAA TCTCTCTTCA GGGTTGGGAC CAGGAGGTAC
    TGCTTCCTGG TGGCCATGGT CTCATGGTTC GTGGATATCG TCCAGTAATA
    AATACTCTGG CAAAAGGCCT AGATATACGC CTTGGCCACA GGGTTGTTGA
    GATTGTTCGC CACAGGAATA GGGTGGAGGT TACTGTAAGC AGTGGTAAAA
    CATTTGTTGC GGATGCTGCA GTCATTGCTG TCCCCTTAGG TGTTCTTAAA
    GCAAACACCA TTAAATTTGA ACCTAGGCTG CCAGAGTGGA AGGAGGAAGC
    AATAAGAGAA CTCTCAGTTG GAGTCGAGAA CAAAATAATT CTCCACTTCA
    GCGAGGTTTT CTGGCCTAAT GTGGAGTTCC TTGGAGTAGT TTCATCCACC
    ACATATGGCT GCAGCTATTT CCTCAACCTC CACAAGGCTA CTGGCCATCC
    TGTTCTAGTT TACATGCCTG CGGGTCGGCT TGCATGTGAC ATTGAAAAGC
    TGTCAGATGA GGCTGCTGCC CAATTTGCCT TCTCTCAGCT GAAGAAGATC
    CTGCCCAACG CTGCCGAGCC GATACATTAC CTAGTGTCAC ATTGGGGCTC
    AGACGAGAAT ACACTTGGAT CCTACACCTT CGATGGGGTG GGCAAACCTC
    GTGACCTGTA TGAGAAGCTG CGGATCCCAG TCGATAACCT ATTCTTTGCT
    GGAGAAGCCA CCAGTGTCCA GTACACTGGC ACGGTGCATG GCGCCTTCTC
    CACTGGTCTG ATGGCAGCTG AGGAGTGCCG AATGAGGGTT CTTGAGCGGT
    TCAGGGAGCT GGACATGCTG GAGATGTGCC ACCCTGCAAT GGGGGAGCAG
    ACCGCCACTG TCTCAGTCCC ACTGCTCATC TCCCGGCTGT GAACAGACCA
    GGAGCTGCAC AAAAATTATA GTCTTCTAAG GCCATTTGGC ACTTGGCACC
    CGGCGAGCGC ACTAAGCCAT TCCCCTGATT GCTCGAGGAA GGCAGCATTG
    GAGCAATTAT CTTATTTGCT TCTCCTTGGC ATGAGGAGTG TGCTGGTGCA
    GCTTGCGGTG CGCTAAATAA AGTCACTGTG AAAATGGAGT GTGGGAGTCT
    GGTGTGTATT GTTGAGTATA AAATGAGGGA GTCAATATGT AGTTAAGCAG
    GGATTACGGA CAATGTGAGC CATCATTACT GAACAAGATG GTGTATGTGT
    GACGAACAAT TAATTTAAAC GATCGATATT GAAAATGAAT GAGTGCTTTG
    CCCCCAAGTT TGACC

    Gene models with high sequence identity

    1. AT2G43020.1 [+] show detail - polyamine oxidase 2
      E-value: 1e-169; Score: 593.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily FAD-linked reductases, C-terminal domain 3e-26
    superfamily FAD/NAD(P)-binding domain 4.1e-24
    HMMPfam Amine oxidase 4.3e-67
    Gene3D no description 3.7e-41
    HMMPanther AMINE OXIDASE 5.8e-255
    HMMPanther AMINE OXIDASE 5.8e-255

    See the detailed result >

    AT2G43020.1

    Model type
    Protein coding
    Short Description
    polyamine oxidase 2
    Computational Description
    polyamine oxidase 2 (PAO2); FUNCTIONS IN: primary amine oxidase activity, oxidoreductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Flavin-containing amine oxidase (InterPro:IPR001613); BEST Arabidopsis thaliana protein match is: polyamine oxidase 3 (TAIR:AT3G59050.1); Has 6381 Blast hits to 5960 proteins in 1057 species: Archae - 96; Bacteria - 2371; Metazoa - 1412; Fungi - 575; Plants - 752; Viruses - 0; Other Eukaryotes - 1175 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR