K00746

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00746

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00746

Determination of introduced cDNA(s)

  • J023068N18 - Rice Full-length cDNAs - Original: J023068N18

    full reading [+] show sequence

    Nucleotide sequence: J023068N18 - full reading 
    GGTGGCGTCC ACGCGCCCAC CCCACGCGCG TCACCGTCGC TCGCCCAAAC 
    TGCGGGCGCG TCGCACGCCG CCCTCCCATC GTTTTCTCCC ATTCTTTCCC 
    CCTCCTCCTC GTGCAACCAC CCAACCACTG CAGCCAGCCA CGAGCCGAGG 
    AAGCCGAGGC CGAGGAGGAA GACGACGAAG ACAAGTAGCG CAAGGAACCC 
    TCGAACCGGG AGGCCGCCGC GGCTCCGATC TGGGAGGGGG AGGTCGAGAT 
    GGTGCCCAGG GACAGGGTGA ATGCCGCTGC CGCTGGTGGC GGCGGCGAGG 
    GGAGGCTGGT CCAGAGCGGT ATAGTGAACA AGAAGTGTGA TAAGAAGGCT 
    CCAAAGAGAA TCCATAAATC AGAGAGGGAG AAACTTAAGC GGGACAAGCA 
    GAATGACCTC TTTAATGAGC TGGGAAACTT GCTAGAACCT GACAGGCAGA 
    ACAATGGGAA GGCATGTGTA CTGGGTGAAA CTACACGAAT ACTAAAAGAT 
    TTACTTTCAC AAGTGGAATC TCTCCGGAAG GAGAATAGTT CACTGAAGAA 
    TGAATCTCAT TATGTTGCAT TGGAGAGAAA TGAACTGCAC GACGATAACA 
    GCATGCTTCG TACTGAAATC TTGGAGCTTC AAAACGAGCT TAGGACGCGG 
    ATGGAAGGCA ATCCTGTTTG GAGTCATGTA AACACCAGAC CAGCTCTCAG 
    GGTACCTTAT CCGACAACCG GAGTGTTCCC AGTACAGCAC CTGCCACATT 
    TACCAGTCAC CACGACGGCA GCATTTCCTC AGCAGCTACC GGTTATCATC 
    GAGCAGCACT ATGCCGCCAC GCCAAGAGAA CTTCAGCTCT TCCCTGAGTC 
    TGCGACCAGC GAAGACAGCG AACCGTCACA AGAACACGGG ATTTCTGACC 
    ATGTAACACG GCCTCAGCCA AGGTACCCAA CACCAACGGC CACTTTGCCA 
    GTAAACCTGT TTCCAGTGTT TCCAGGAAGA CAAGATCAAC AATGTAGCAG 
    TGGTACTTCT GGCACTAACG AGGAAGACCG TATAGGTAGA TCTTAGGTAC 
    ACTACATAAC GAGAGGTCCA CACAATGATT TGAGAATTCC TTTAGTTTCA 
    ACGTTTAACT TTGCAAGTTT AGCAAATGTG AAACAGAGAT CTGCGACTGT 
    GCTCATGGGT AGCACCTAAT CTGTATATCT GAATCTCAGT TTTAAGTGGT 
    CAAATAGGTG ACATTC

    Gene models with high sequence identity

    1. AT3G47640.3 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
      E-value: 5e-31; Score: 132.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    superfamily Helix-loop-helix DNA-binding 6.2e-11

    See the detailed result >

    AT3G47640.3

    Model type
    Protein coding
    Short Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Curator Summary
    Encodes POPEYE (PYE), a bHLH transcription factor regulating response to iron deficiency in Arabidopsis roots.
    Computational Description
    POPEYE (PYE); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: cellular response to iron ion starvation, iron ion homeostasis, regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G36060.1).
    Link
    InterPro Scan - TAIR