K00818

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00818

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00818

Determination of introduced cDNA(s)

  • J023007F10 - Rice Full-length cDNAs - Original: J023007F10

    full reading [+] show sequence

    Nucleotide sequence: J023007F10 - full reading
    GTTATGTTGT GCAGGAGGCT ATAATTGTTA TTAAGGACAT CTTCAGGCGC 
    TACCCTAATA CGTATGAGTC GATCATCGCA ACACTCTGTG AAAGCCTAGA
    CACCTTAGAT GAACCAGAGG CTAAGGCATC AATGATTTGG ATTATTGGAG
    AATATGCTGA AAGGATTGAC AATGCTGACG AACTTCTTGA GAGCTTCTTG
    GAAACATTCC CAGAAGAACC AGCATTAGTT CAATTGCAGT TACTAACGGC
    AACTGTTAAG TTGTTCCTTA AAAAGCCAAC TGAGGGGCCT CAACAGATGA
    TACAGGCTGT TCTCAATAAT GCAACAGTTG AAACAGACAA TCCTGATTTG
    CGCGACCGAG CTTATATATA CTGGCGACTT CTTTCTACTG ATCCTGAGGC
    AGCTAAAGAT GTAGTTTTGG CAGAGAAACC TGTGATCAGC GATGATTCCA
    ACCAGCTTGA TTCTTCTCTC CTAGATGATC TGCTAGCCAA TATTTCTACC
    CTTTCATCAG TTTATCACAA GCCTCCAGAA GCATTTGTTA GCCGCGTTAA
    AACAGCTCCT AGGGCTGATG ATGAGGAGTT TGCTGATACA GCTGAAACAG
    GATATTCGGA GTCACCATCT CAGGGTGTTG ATGGGGCATC ACCTTCCTCT
    AGTGCTGGCA CTTCTTCTAA TGTTCCAGTG AAGCAGCCAG CAGCACCAGC
    TGCTCCTGCT CCAATGCCAG ACCTCCTTGG TGATTTGATG GGTATGGATA
    ACTCCATTGT TCCTGTTGAT GAACCAACAG CACCTTCAGG CCCTCCACTA
    CCTGTTTTGT TGCCATCAAC CACTGGCCAA GGACTGCAGA TCAGCGCACA
    ACTAGTGCGG CGTGATGGCC AAATATTCTA TGATATATCT TTTGATAATG
    GCACTCAAAC TGTGCTAGAT GGATTCATGA TTCAGTTTAA CAAAAATACC
    TTTGGCCTTG CAGCCGGTGG TGCACTTCAG GTCTCTCCAC TGCAACCTGG
    GACCTCGGCC AGGACGCTGC TACCTATGGT GGCATTCCAG AATCTCTCTC
    CTGGAGCGCC AAGCTCACTG CTGCAGGTTG CGGTGAAGAA TAATCAGCAA
    CCTGTGTGGT ACTTCAATGA CAAAATCCCT ATGCATGCCT TCTTTGGTGA
    AGATGGCAAA ATGGAACGAA CAAGTTTTCT TGAGGCCTGG AAATCTTTAC
    CTGATGACAA CGAATTTTCG AAAGAGTTCC CCTCTTCTGT CGTCAGCAGC
    ATAGATGCGA CCGTTGAGCA CCTTGCAGCA TCAAATGTGT TCTTTATCGC
    CAAGAGGAAA AACTCAAACA AGGATGTTCT GTACATGTCT GCAAAGATTC
    CGCGTGGAAT CCCCTTCCTG ATAGAGCTTA CTGCTGCAGT CGGTGTTCCT
    GGCGTGAAGT GTGCGGTCAA AACTCCAAAC AAGGAGATGG TGGCTCTCTT
    CTTCGAAGCC ATGGAGTCTC TTCTCAAGTG ATACAAAATT GAAGGATCAT
    TGTTCCTTCC AAATTGATCA GTTCATGAGC TATTGTAGGT TTGGATGCGG
    CGTTGTTTCA CAGGAGCTGG TGTGAATTGT ATTTGTTGTT CTTTGTATTA
    GATTACTGTA TTTAAACTGC TAGTTTCCTG GTTTCAAAGT TTTTTCACGA
    CGAACACTCG ACATGGCCAT TTTGTCTGCG TAATTTGTAT ATCTCGGACC
    TGAACCTCTT TTCATGCCAT AGCATATGAA ATATAAGTAG CTTGCAAACT
    CGTAATTGAT GAGGTACAGA TATCATTTTT ATCAACTACA TTGTTGTTTC
    ACTTGTCTAC TTTAAGCAAT GATTTCCTTT TATCTGCTTC CG

    Gene models with high sequence identity

    1. AT4G11380.2 [+] show detail - Adaptin family protein
      E-value: 0; Score: 657.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Clathrin/coatomer adaptor, adaptin-like, N-terminal 1e-34
    HMMPfam Clathrin adaptor, beta-adaptin, appendage, C-terminal subdomain 3.1e-31
    HMMPfam Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain 5.7e-08
    HMMSmart Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain 1.9e-06
    Gene3D Armadillo-like helical 2.8e-52
    Gene3D Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain 1.8e-31
    Gene3D Beta2-adaptin/TATA-box binding, C-terminal 3.5e-30
    superfamily Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain 3.1e-37
    superfamily Armadillo-type fold 8.4e-36
    superfamily Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain 2.7e-35
    HMMPanther ADAPTER-RELATED PROTEIN COMPLEX 1, BETA SUBUN 1e-204
    HMMPanther ADAPTER-RELATED PROTEIN COMPLEX, BETA SUBUNIT 1e-204

    See the detailed result >

    AT4G11380.2

    Model type
    Protein coding
    Short Description
    Adaptin family protein
    Computational Description
    Adaptin family protein; FUNCTIONS IN: protein transporter activity, clathrin binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Armadillo-like helical (InterPro:IPR011989), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553), Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain (InterPro:IPR013037), Clathrin adaptor, beta-adaptin, appendage, C-terminal subdomain (InterPro:IPR015151), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Adaptor protein complex, beta subunit (InterPro:IPR016342), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041); BEST Arabidopsis thaliana protein match is: Adaptin family protein (TAIR:AT4G23460.1).
    Link
    InterPro Scan - TAIR