K00823

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00823

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00823

Determination of introduced cDNA(s)

  • J013111O20 - Rice Full-length cDNAs - Original: J013111O20

    full reading [+] show sequence

    Nucleotide sequence: J013111O20 - full reading 
    GGCTATGAAG TGAAGAGGCC ATTGTTGGGG CCAAAAGATC TACCGCTCTG 
    CATCAATAAG CTGCCCCCGA TGATCGATCG TGAGCCTGCG GGTAGTAGTA 
    GGCACGGAAG TAATATGGAT CCATCCATCA ACATACCGGT CAACAGAGAT 
    GCCATCACCG AAGAAGTCGC CGCCGCGTTC GCGGAATCCG AGGTGATCCC 
    CGAGAGGTAT TGCCGACCTG ATGAGGTCCA TGACGGCATC GTCGTTGGCC 
    ATGACGATGA CGAGGCCTAC GAGCTGCCGG TGGTGGACAT GGAGAAGCTG 
    CTTGACCCGG AGCTTGCGGA GGCAGAGATT GCAAAGCTTG GTTCTGCATG 
    TCAAGATTGG GGTTTCTTTC AGTTAGTAAA CCATGGAGTC GACGAACAAG 
    TGGTGAATGA AATGAAAGAC AGCACGGTCA AATTCTTCAG CTTGCCACTA 
    GAAAGCAAAA GGACAGTGGA AATCCAAGAC AATGGCTTTG AAGGGTTTGG 
    CCACCATTAC AGAAGGGCAT CAGGTAAGCT GGACTGGGCG GAGAGCGTGA 
    TCCTCCTTAC GCAGCCAATC CAAGAGAGAA ACCCGGAAAT GTGGCCTACA 
    AACCCATCGT CGTTCAGGGA TGCACTTGAC AAGTACTCCG CCGAGATGAC 
    GAAGCTGGCT ATGAGGATTG CGAGCATCAT GGCTACCGAC CTCGGGGTCG 
    ACCAGGAGGC TTTGGTTGGC GCCTTTAGGG ATAAACAGCA GAGCATGGCC 
    ATACACCACT ACCCTCCTTG CCGCCACCCA GACAAGGTGA TCGGCATCAC 
    GCCGCACTCC GATGGTCTCG GCCTGACGCT GCTGCTGCAG CTCGACGACA 
    CGCCCGGCCT GCAGATCAGG AAGGATGGCA GGTGGTTACC AGTGCGACCT 
    CGCCCGGGCA CCTTCATCAT CAATGTCGCC GACATACTCG AGGTCCTTAC 
    CAATGGCGCG TACAAGAGCG TCGAGCACAG AGTACTCGCG GACGCAGAGA 
    AAGGCCGAAC CACCATCGTG ACATTTCATG AAGCCTATGT CGATGGAATG 
    GTGAAGCCGA TCCCGGAGGT GCTCAAGCTC AACGGAGCAG AGGCACGCTA 
    CAAGTCCATA GAAAGAATTG AGTATATCAA GGGAAACTTT GTGGCGCTTT 
    CTGAGGGGAC ACGATTTCTG GAGAGCCTTA AGATATAGCT TGTGAAAGTT 
    ACGCAGGCAA CTAGAAGATC TCTATGGAAC CCAATTAATC ATGGATGCTG 
    GAAAATACTG CGCCTCCTAT ATATTATCCA GTTCAATGTA ATGTGGAGGA 
    AGGATTATTA TCGAAAAATG TTAAATGTGT TTGTTAAGAA TAAACCTTGT 
    GTGCTGATTA GTAGTAGCTC TATATGGTTA GCTGTTCATT TTTAGGTGCA 
    TGTTTGCATG TGTCGGCCTG ATTGGAGGCT ATGTCTGCTT TCCTTGTAAC 
    AGCTTATTTT AAGCAATGGA ATATAGTCTG GAAAAGCTGT CAATTCAGCA 
    GCACC

    Gene models with high sequence identity

    1. AT1G17020.1 [+] show detail - senescence-related gene 1
      E-value: 2e-61; Score: 234.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Oxoglutarate/iron-dependent oxygenase 3.3e-22
    HMMPanther ETHYLENE-FORMING-ENZYME-LIKE DIOXYGENASE 1.7e-123
    HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 1.7e-123
    superfamily Clavaminate synthase-like 7.7e-90
    Gene3D no description 6.5e-89

    See the detailed result >

    AT1G17020.1

    Model type
    Protein coding
    Short Description
    senescence-related gene 1
    Curator Summary
    Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene.
    Computational Description
    senescence-related gene 1 (SRG1); CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G17010.1); Has 8560 Blast hits to 8517 proteins in 996 species: Archae - 0; Bacteria - 1133; Metazoa - 115; Fungi - 988; Plants - 4970; Viruses - 0; Other Eukaryotes - 1354 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR