K00839

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00839

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00839

Determination of introduced cDNA(s)

  • J023088I08 - Rice Full-length cDNAs - Original: J023088I08

    full reading [+] show sequence

    Nucleotide sequence: J023088I08 - full reading 
    GGATGGAAAA AAAAAAGAAC CATTTGCAAA TTGCAAAAAC GTCCTTTCTC 
    CAGTTCTCCT CCCCTGAGCT TCTCCCAACA AGAACACCCA CTTGCTCTCT 
    TCCCCTCTCT CTCTCGCCCC TCGAATTCTG GCGGCGAAGC GTACATGGAC 
    AAAGCGGAGG AGGGCCAGTC TTCGGAGCCC GCCGATTCCG CGGCACCAGC 
    CCAGGATGAC AGTGTGCAAA CTGCATCTGG GCATAATTCG CGAAGGCCAA 
    ACCTTTCTTT GCAAATACCA GCTAGGACCC TGGATAACCA AATAGGCACT 
    TCAGCGAGAA TTAATATATC CCCTAGCCCC AGCTCAACGA GAGCAGGATT 
    GCCCCCGAGG CCTAATTCAA CTAGAACAAA ATCTTCTCTG AAGAGCATCA 
    TTCCGCAACA GAGTTTCAGG GCGAGAAGTT CAGCACAGGA AGGTGATCGG 
    GCGATCCTTC TGGTTCCTGG GACACCATCA GAAGGGCAGC AGGATAATAC 
    ATCAACGTTG AGATCATTTT CTTTTAGAAA AGTCATAAAC TCATTATCCG 
    CAAAACGTAC ACATTCTTTG CCAGTCACAC CTATAGCAAC TTCAGACAAA 
    ACTTCTTCTC CGGCAAATCA GATCAACAAC CTACCAACCA CAGATGATCA 
    AGATGTTCAA GCAAGAATTA GGCGCTCACT TTCAGTACCA GGAAATCGTA 
    AAAACAGGAG TTTGAGGAGG GCGGATTCAT TAGGTGTCAT CCGTGTGATT 
    CCAACAACTC CCCGACCTAT CCCAGTTAAT ACAACTGCAT CAAGTGATGG 
    GATTGAGGAG ACAGTGGATG TTCCTGGAGA TGGAGGCAAA GATATCCCTG 
    AAGAAGAGGC AGTCTGCAGA ATTTGTCTAG TTGAACTAAA TGAAGGAGGG 
    GAAACACTTA AAATGGAGTG CAGCTGCAAA GGGGAACTTG CTCTTGCACA 
    CCAAGACTGC GCTGTCAAAT GGTTTAGCAT CAAGGGAAAC AAGATATGTG 
    ATGTTTGTAA GCAAGAAGTT CAAAATTTGC CTGTCACTTT GTTGAGAATA 
    CCAACTCAAA CTGCTAATAG GCGAGTAACA AATGGTGCTC ATCAAAGAGC 
    CTCTCAACAA TACAGATTTT GGCAGGACAT TCCAATTTTG GTCATGGTTA 
    GCATGCTTGC ATACTTCTGC TTCTTGGAAC AACTTCTGGT TACAGATTTG 
    CTGTCACACG CACTGGCAAT TTCGTTGCCT TTCTCATGCG TGTTGGGCCT 
    CCTTTCTTCC ATGATAGCAT CCACCATGGT AACCAAGAGT TATCTATGGG 
    CCTATGCTTC GTTCCAGTTT GCTATTGTGA TACTGTTTGC TCATATCTTC 
    TACAATGTGT TAAAAGTAAA TCCAGTCCTT GCGGTCCTAC TATCCTCATT 
    CACTGGGTTT GGGATTGCTA TCAGTGCGAA CTCAATGCTA GTGGAATACT 
    TGAGGTGGAG ATCTAGGAGG AATCAACAGC TAGCTCAAAC TGTCGATGAT 
    GGTCAGCGAC AAGAACCTGG AAGTAATGCT GTAAATGAAA ACAATGGTGA 
    TAGACAGCAA GCGCAGCATC GAGAATCTGG AGATAACATT GTATGACAAT 
    TCAGATTAAG AAGCGCAATG AATGTGAATA GCTAGCTTTG ATATGTTCAG 
    TAGGTTTAGC TAGTCGAACT TCAGAATCAC CTATGCAAGA ATAGGAAACA 
    TGGAGCAAAT TTCCAATGGC GACAGCATAA GATGATAAGA GGCTATGTGA 
    CAAGTGAGAA CATGGAGAAT GCGGCGGATA TAGTTAGGCA ACACAGAGAG 
    CTGAACCAAA CTATCCATTG TACACGGTAT TAATTTAGCA GTTTGACATC 
    ATAAGGTGTG GTTTGTTCAG TGTAAGTTTA GTAGTTCTGG TCGTCTGGTA 
    TTACAAAATT ACATCACGAA AGTGAGTGCA GCTAGTGGCT AGCCATACAG 
    ATATATATAC AGGTATAGGT ATGTGAAATA CAGTTATACC AGCTTTTACA 
    GTTCTGTAGT CTGTGTGAGG AGAAATGTGA AGGCAGAGAA TTTTAGATAA 
    TGACATATTT CAGAGTTCTG AACTTAGAAA TTATTCGGGT AAAAAAATAG 
    AGAAGAACTG TATGCAGTGC GTGGGGATTG AATTGAAATG AAATATGGAA 
    ATGATGTTCG CTTC

    Gene models with high sequence identity

    1. AT5G60580.3 [+] show detail - RING/U-box superfamily protein
      E-value: 3e-99; Score: 360.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 0.0000000000038
    HMMPanther MEMBRANE ASSOCIATED RING FINGER 0.0000027
    HMMSmart Zinc finger, RING-CH-type 5.8e-18
    HMMPfam Zinc finger, C3HC4 RING-type 0.0000019
    superfamily RING/U-box 0.0000012
    ProfileScan Zinc finger, RING-CH-type 19.348

    See the detailed result >

    AT5G60580.3

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G09760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR