K00846

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00846

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00846

Determination of introduced cDNA(s)

  • J033063M10 - Rice Full-length cDNAs - Original: J033063M10

    full reading [+] show sequence

    Nucleotide sequence: J033063M10 - full reading 
    GTCCCTCCCG TCTCCTCGCG CCGCCGCCGC CGCCGCCGAG CAGCGCCGAT 
    CCCCACCCAC CCCGGCGGGC AAGCGGCGCC GGCGTCGTCC TGCTCCCCAC 
    ACCCAGCCGC CGGTGGGCAC ACGCACAGAG AGATCCTAGC AACTATGGTG 
    ATCCCTCCAC CGGAAAGGGC GGCTAGGATC ACGCGCTTTC TGAAGCCCTA 
    CCTTCTGAGG ATGCATTTCT CGAACAAGTA TGTATCCGCT CAGGTGGTTC 
    ACACCCCAAC GGCGACGGTC GCCTGTTCCG CGAGCTCGCA GGAGAAGCTG 
    CTGAGGCCGA ACATGGAGTC CACTCGCGAT GTCGCTGCCG CTGCCAAGAT 
    CGGTAAGCTG CTCGGCGAGC GGCTGCTGCA GAAGGGCATA CCCGCTGTGT 
    GCATCCACAT GAAGAGAGAG CAGAAGTACC ATGGGAAGGT CAGGGCTGTC 
    ATTGACTCTG TTAGAGAAGC TGGAGTCAAG CTGTTGTAGT CTCTAAAACA 
    GTAGAATCTT TTATTAAAAT TTCTGCAAGC TTGTTCCTCT GAATCTCAGG 
    CAAAATCTGA AAGATGTCGG ATCAGACAGG AAATTTTCAT TTCGGTATTG 
    AGGGCTAGAT GGCCTATGTG GAGATGTTCC TGGTGAATAA AGGATTTTGT 
    ACTATTGACT ACTGGG

    Gene models with high sequence identity

    1. AT5G27820.1 [+] show detail - Ribosomal L18p/L5e family protein
      E-value: 1e-41; Score: 166.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein L18/L5 4.5e-18
    superfamily Translational machinery components 1.2e-22
    Gene3D no description 3.6e-15

    See the detailed result >

    AT5G27820.1

    Model type
    Protein coding
    Short Description
    Ribosomal L18p/L5e family protein
    Computational Description
    Ribosomal L18p/L5e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: Ribosomal L18p/L5e family protein (TAIR:AT3G20230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR