K00913

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00913

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • increased length (PATO:0000573)
    (Stem::Shape::long internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00913

Determination of introduced cDNA(s)

  • J033086D17 - Rice Full-length cDNAs - Original: J033086D17

    full reading [+] show sequence

    Nucleotide sequence: J033086D17 - full reading 
    GACACAGCCG GCGGCAGGCA GCTCAGCTCA GCTCCGATCG GCGGCGGCGG 
    CCATCTCCGG TAATAATGTC GTCGTCCTCG TCCAAGCTGC ATCTCCCGGC 
    TGACGACAGC GTCCTCCTCC TCCTCACGCA CTCCAACCTC TCCACCTTCT 
    CCTCCGACAT CCGCGTCTCC AAGCAGACCT CCGTCGAGGC GCTCAAGGAC 
    AAGCTCTGGA GGAAGACCGG CACATCCGTT GCCTTCATGC GCCTCCAGCT 
    CCGCGACGAC ACCGGCGCCA TGATCGCCGA CCTCGACCAC GATGACGCCA 
    CCCTCGCCTC CTACTCCCCA TACGACGGGT ACCGTCTGCA CATTATCGAT 
    CTCGATCCTT CGTCAATCAC CTCTGGTGGT TGGTTGGAGG ATACTTCCCT 
    TGTTGAAAAG TACACCATCT CAGATGAAGC ATATAATAAT CTTGATACAA 
    ACTTTCGAAA ATTCAAAGAA AAGATGGCCT TTAAAAACCC TACGTCAGAT 
    GATAAACAAC AACAATCTGA CAAGCATATG GAGGAATTGT GCGCCGACAT 
    CAAGGTGGGT GATAGATGTG AAGTCGAGCC AGGTGCTAAG AGGGGTACTG 
    TAAAATTTGT TGGCAGAGCT GAAGCTCTTG GACGTGGATT TTGGGTTGGA 
    GTCCAATATG ATGAACCACT TGGAAAGCAT GATGGCATGG TGAAAGGCAT 
    TCGCTTTTTC GAGTGTCCTC AAGGGCATGG AGCTATTGTT AGGCCAGAGA 
    AAGTAAAGGT CGGGGACTAC CCAGAGAGGG ACCCTTTTGA AGAGGAGGAG 
    ATCTAGGCGG TGCGCCATTT ACGTTGGACA TGGTCCTCTA GGGATACCCA 
    TATTCAGAAT TGCTCCCGTT AAAATCTTTC GCCCTTTTTT TGGTCTATTG 
    GTTTGAGAAT TAAGATCATT GAACATGAAG AATATATGTG CGTGTGCTTG 
    TTCCTGATCC CATTCTGGGA TGACCATGGT GAAATTGGGG ATACTGTTGT 
    ACTTTTAAGT ACTGAGCCAT CTGGACGCTT GAGTTGGAAG TTTGGTTGAA 
    ATTGGAACGA TGTGACAGAA AAGTTGGAAG TTTGTGTGTG TAGAAAAGTT 
    TTGATGTGAT GAAAAAATTG GAAGTTTG

    Gene models with high sequence identity

    1. AT3G10220.1 [+] show detail - tubulin folding cofactor B
      E-value: 7e-90; Score: 327.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Cap-Gly domain 5.5e-27
    superfamily Ubiquitin-like 2.3e-16
    ProfileScan Cytoskeleton-associated protein, CAP-Gly 15.7
    HMMPanther TUBULIN-SPECIFIC CHAPERONE B (TUBULIN FOLDING 1.2e-69
    HMMPanther DYNACTIN 1-RELATED MICROTUBULE-BINDING 1.2e-69
    Gene3D no description 2.6e-16
    Gene3D no description 4.8e-24
    HMMPfam Cytoskeleton-associated protein, CAP-Gly 2.4e-22

    See the detailed result >

    AT3G10220.1

    Model type
    Protein coding
    Short Description
    tubulin folding cofactor B
    Curator Summary
    Encodes a tubulin-binding cofactor. Homozygous mutant plants are embryo lethal. Heterozygous mutant plants showed increased ploidy and higher numbers of spindles and phragmoplasts, suggesting a role in cell division.
    Computational Description
    tubulin folding cofactor B; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: tubulin complex assembly, embryo development, cell division; LOCATED IN: nucleus, cytoplasm, phragmoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytoskeleton-associated protein, CAP-Gly (InterPro:IPR000938); Has 1750 Blast hits to 1417 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 1247; Fungi - 285; Plants - 70; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR