K00921

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00921

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00921

Determination of introduced cDNA(s)

  • J013124K03 - Rice Full-length cDNAs - Original: J013124K03

    full reading [+] show sequence

    Nucleotide sequence: J013124K03 - full reading 
    GTTACTTCTT ATGTGTTTAG TGAAGGCAAA ATGAACATTG AACGGCTGAA 
    GCAACTTGTC GATCTGGTTG GGAAACATAG GCTTGTTTTG GACCTTAGTT 
    GTAGAAAAAA GGATGGAAGA TATGCCATCG TGACTGACAG ATGGCAGAAA 
    TTCAGTGATG TCTTTGTGGA TGAGCCAACA TTAAAACATC TTGCTGCCTA 
    TGCAGATGAA TTTTTGGTTC ATGGTGTTGA TGTGGAGGGG AAAAGGTTAG 
    GAATTGATGA AGAACTTGTC GAACTATTGG GACGTTATTC ACCTATACCT 
    GTAACTTATG CTGGGGGTGT GTCTACAATG GATGACCTAG AGAGGATAAA 
    AAGAGCAGGC AACAGTCGAG TTGATGTTAC GGTTGGGAGT GCCCTTGATA 
    TATTCGGAGG AGATTTGCCC TACAAGGACG TCGTTCTTTG GCACAAGGAA 
    CAAAATATGG TTAGCCAACC ATGATATATC AGAGGTATAA TGCTTAACCT 
    GTTCCATCAG CTCGATTGTT ATGCACAGAC CTCCAGGGTC TAGAAGTAAT 
    GCTAATGCAT TTTCTCAAGT GTTGTACTGC GAATAATTCG ATGGGTCTTC 
    TGTGGTATAA GTTCAAGCTG AAGGGTTCGA TTTTGTTCGG ATCTGGAACT 
    AGGCTTTACA TTGAGGACTG GCCGAGCTGT TTATCAAGCG ACTGCACTAT 
    ATGTTTTTGA GATTAAAACA CTGTTAACAT GATATGTAAG CACATCTACT 
    GAGTTAGCCC GTCTGATGGT GAAACATAAT GGGGGCCTCC ACTAGTCCAC 
    AGCTCATTAA TCATACTCAA CATTTGGCG

    Gene models with high sequence identity

    1. AT2G36230.1 [+] show detail - Aldolase-type TIM barrel family protein
      E-value: 1e-65; Score: 246.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Aldolase-type TIM barrel 1.8e-17
    superfamily Ribulose-phosphate binding barrel 1.3e-19
    HMMPanther Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic 3.7e-63
    HMMPfam Histidine biosynthesis 1.1e-16

    See the detailed result >

    AT2G36230.1

    Model type
    Protein coding
    Short Description
    Aldolase-type TIM barrel family protein
    Curator Summary
    Encodes a BBMII isomerase involved in histidine biosynthesis.
    Computational Description
    ALBINO AND PALE GREEN 10 (APG10); FUNCTIONS IN: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060), Histidine biosynthesis (InterPro:IPR006062), Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic (InterPro:IPR011858); Has 5178 Blast hits to 5176 proteins in 1344 species: Archae - 226; Bacteria - 3159; Metazoa - 0; Fungi - 140; Plants - 59; Viruses - 0; Other Eukaryotes - 1594 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR