K00937

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00937

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
  • abnormal (PATO:0000460)
    (Silique::Others)
root (PO:0009005)
  • abnormal (PATO:0000460)
    (Root::Others)
stem internode (PO:0020142)
  • increased length (PATO:0000573)
    (Stem::Shape::long internode)
T2  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00937

Determination of introduced cDNA(s)

  • J013002D12 - Rice Full-length cDNAs - Original: J013002D12

    full reading [+] show sequence

    Nucleotide sequence: J013002D12 - full reading 
    GGCAAAATCC TCCTCCCGAT CTCCACCACC ACTTTCCCAT TGACCGCGGC 
    GGGAAAGGGC CTTCGAGACT TGGGAGGTTG GAGCGAGCAA GCTCGGCCAT 
    GGCGAAGCTC TCCTGCCTTC TCATCGTCTC CTTCGCCGTC GTCGCGGCGT 
    TGGCGGCCAC GGACGACGAC GCGGCGGCGG CGGCTGAGGG GATCACGGTG 
    GCGGAGGCGT CGTCGGACCC GGAGAACAAG TGCGTGTACA CGATATACGT 
    GCGGACGGGG ACGATCTGGA AGGGCGGGAC GGACTCGGTG ATCGGCGTGA 
    CGCTGCTGGG CGCCGACGGC TCCGGGGTGC GGATCCGCGA CCTGGAGCGG 
    TGGGGCGGCC TCATGGGCGA CGGCCACGAC TACTACGAGC GCGGCAACCT 
    CGACATCTTC AGCGGCCGCG GCCCCTGCAT GCGCCAGGCG CCGTGCCGGA 
    TGAACCTCAC CTCCGACGGC ACCGGCCCGC ACCACGGCTG GTACTGCAAC 
    TACCTCGAGG CCACCGTCAC GGGTCCCCAC CTCGGCTGCG CGCAGCAGCT 
    CTTCACCGTC GAGCAGTGGC TCGCCACCGA CGCATCGCCC TACCGCCTCT 
    ACGCCGTCGT CGACAACTGC AACAAGGCCA AGGACGCCGC CGCCGCCGAC 
    GCCGACGAGC CGAGGGTCAC CGTGCTGTAA ATAAATCGTA GATTCTCTTT 
    GGATTCCCGT GTAATTATGT ACCTTACGCG TATGTGGTCT ACTGCTCGAC 
    TGCTCGTGCT GTCGTGCATT GCAGTGATTG ATCCTTTTTT TTACATTGAG 
    GGGAGGATGC TAAAATAATT ATACGATTTT AAGAGGGTAA TAAGATGAAA 
    CCAGCGTTGG ATCGGTCGGA CGATCCGGTG CTCACTCCAG TTGGT

    Gene models with high sequence identity

    1. AT4G39730.1 [+] show detail - Lipase/lipooxygenase, PLAT/LH2 family protein
      E-value: 8e-45; Score: 177.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Lipoxygenase, LH2 0.00000024
    ProfileScan Lipoxygenase, LH2 19.342
    superfamily Lipase/lipooxygenase, PLAT/LH2 2.1e-23
    HMMPfam Lipoxygenase, LH2 0.000000000059

    See the detailed result >

    AT4G39730.1

    Model type
    Protein coding
    Short Description
    Lipase/lipooxygenase, PLAT/LH2 family protein
    Computational Description
    Lipase/lipooxygenase, PLAT/LH2 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976); BEST Arabidopsis thaliana protein match is: Lipase/lipooxygenase, PLAT/LH2 family protein (TAIR:AT2G22170.1); Has 247 Blast hits to 225 proteins in 46 species: Archae - 0; Bacteria - 3; Metazoa - 94; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR