K00938

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00938

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00938

Determination of introduced cDNA(s)

  • J013036C22 - Rice Full-length cDNAs - Original: J013036C22

    full reading [+] show sequence

    Nucleotide sequence: J013036C22 - full reading 
    GATCACTTCC ATAGATCCCC TCCTCTTCTT CCTCCTGCTC GGCTTCCTCA 
    CACAGAGCTT CTCGTTGCAT TAGCCGACGG AGGCCACCGG TGAGGAGAGC 
    CCGAGGAGGA GCAAGAAATG TCTGGCAACG ACGGAGACAT GAAGATGAGG 
    GTGATCGTCG TGGAAGGCGA TGAGACGAGT AACGCCCCGA AGGATGTATG 
    CTGCGAGTAC ACCCTCGATG GCTCCGTGGA TATCAAGGGC TCACCGGCGG 
    TGAAGGGCAA GTCCGGCGGA TGGCTCGCCG GCGGCCTTAT TCTTCTGAAC 
    CAGGGTCTGG CAACCCTGGC GTTCTTCGGG GTAAACGTGA ACCTGGTGTT 
    GTTCCTAACG TGGGTGCTGC AGCAGAGCAA CGGCGACGCC GCCAACAACG 
    TGAGCAAATG GACCGGCACG GTTTACATGT TCTCCCTCAT CGGCGCCTTC 
    CTCAGCGACT CCTACTGGGG CCGCTACAAG ACCTGCGCCA TATTCCAGGC 
    CATCTTTGTC CTTGGCCTCG CGCTGCTGTC CCTGTCGTCG CGGCTGTACC 
    TGATCAGGCC GGTCGGGTGC GGCACGGAGC ACGTGCCCTG CGAGCCGCAC 
    TCCGGCGCGG AGCTGGGGAT CTTCTACATC GCGCTGTACA TGATCGCGTT 
    CGGCAACGGC GGGTACCAGC CCAACGTCGC CACCTTCGGC GCCGACCAGT 
    TCGACGGCGA GGACCCGGCC GAGTCGCACT CCAAGGTCTC CTTCTTCAGC 
    TACTTCTACC TGGCGCTCAA CCTCGGCTCG CTCTTCTCCA ACACCTTCCT 
    CAGCTTCCTC GAGGACGAGG GCAACTGGGC GCTCGGCTTC TGGGTCTCCA 
    CCGCCGCCGC GGCCACCGCG CTGCTGCTGT TCCTCGGCGG CACGCTCCGC 
    TACCGGTACA TCCGCCCCAG CGGCAACCCG GTTGGCAGGA TCTTCCAGGT 
    CGCGTTCGCC GCGTGCAGGA ACTGGAAGGC CGGCGAGTCG CCGGGCGCCG 
    TGACACTCTA CGAGAGCGAC GAGAAGGCGG ATTCCGGTGG GAGGAAGCTC 
    CTGCACACGG AAGGTTTCAG GTTCTTGGAC CGTGCGGCGG TGGTGGGCGC 
    TAACCCGAAG CTTGGCACGT GCACCCAACC GCGTGACCCC TGGAAGCTGT 
    GCACGGTGAC GCAGGTGGAG GAGGTGAAGA GCATCCTGCG GCTCCTCCCC 
    ATCTGGCTCT GCACCATCCT CTATTCGGTC GTGTTCACGC AGATGGCGTC 
    GCTGTTCGTC GTGCAGGGCG CCGCGATGCG CCGCACCACC CGGTTCCCGG 
    GCTTCTCCGT CCCGCCCTCC AGCATGTCGG CCTTCGACAT CCTCACCGTC 
    GCCACCACCA TCTTCCTGTA CCGCCGGGCC GTCTGCCCGC TCGTGTCGCG 
    GCTCACGGGC CGCCACACCG GCCCAACCGA GCTGCAGAGG ATGGGCCTCG 
    GCCTGGTGCT CGGCGCGATG GCCATGGCCA CCGCCGGCAC GGTCGAGCAC 
    TTCAGGAAGG CCGGCGCCAC CACGGCGATG AGCAGCGACC TGCACATCAT 
    GTGGCAGGTG CCGCAGTACG CGCTGATCGG CGTGTCGGAG GTGATGATGT 
    ACGTCGGCCA GCTCGAGTTC TTCAACGGGG AGATGCCCGA CGCGCTCAAG 
    AGCTTCGGGA GCGCGCTCTG CATGATGTCC ATGTCGCTCG GCAACTACTT 
    CAGCGACGTC ATCGTGAGCG CGGTGACCAA GGCCACCGCC GTGCGCGGCC 
    GCCCCGGCTG GATCCCCGCC GACCTTAACG AGGGCCACCT CGACAAGTTC 
    TTCTTCCTGC TCGCCGTGCT GGCCGTCGCG GACTTCGCCG TGTACCTCGT 
    GTGCGCGAGC CGGTACAGGA GTGGCACGGT GGACGTCGAC CGGAGCGACG 
    GGGAGGAGGA GGATGGCGTG GCCGGCAGGC AGATGGCGGC AACGGTGTAA 
    GCGTCAGGAT GAATCGGCCG TCTGCTCGCG CTCGATAGAT GCATGGCAGG 
    CTGTCGTGGT TCTTGAGACG GAGACTGCAG ACTCTTCGAG GGGATGAGTT 
    GCATTGGGAC GAGTTGGTTT AGCACGACAA GTCTCCGTTG ATGATAGGAC 
    ATGCACGGGG GGATAGTGAC ACGATACTAA AGAATAAGAG GTCGCCTACA 
    GATGCAGTAT TGTTCTATCA TGTACGCCTG TGTTTCATCG TTTCACATTT 
    TTCTGGCCAA TGTAACAAGA GAACGCGACT GTTACTGACC

    Gene models with high sequence identity

    1. AT1G32450.1 [+] show detail - nitrate transporter 1.5
      E-value: 2e-172; Score: 603.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Oligopeptide transporter 6e-71
    superfamily Major facilitator superfamily, general substrate transporter 9.1e-22
    Coil coiled-coil 0
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 3.1e-264
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 3.1e-264

    See the detailed result >

    AT1G32450.1

    Model type
    Protein coding
    Short Description
    nitrate transporter 1.5
    Curator Summary
    Transmembrane nitrate transporter. Involved in xylem transport of nitrate from root to shoot. Induced in response to nitrate. Not involved in nitrate uptake. expressed in root pericycle cells.
    Computational Description
    nitrate transporter 1.5 (NRT1.5); CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: NITRATE TRANSPORTER 1.8 (TAIR:AT4G21680.1); Has 7755 Blast hits to 7381 proteins in 1434 species: Archae - 0; Bacteria - 3851; Metazoa - 707; Fungi - 433; Plants - 2214; Viruses - 0; Other Eukaryotes - 550 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR