K01003

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01003

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01003

Determination of introduced cDNA(s)

  • J033034H21 - Rice Full-length cDNAs - Original: J033034H21

    full reading [+] show sequence

    Nucleotide sequence: J033034H21 - full reading 
    GGCTTGCACT AGCATACTGA GCCACTACGG CCCTCGATAT GGACAGGCCC 
    TATCCTCCTC TTCTTCCCCT TGCTCTGCTC GCCCTCCTCT TCCTCTGTCT 
    CCTCCACGGC GAGCGCGCCG CCGCCGCCGA CGACGACCTC ACCTCCGGCA 
    CCGGCGACGG CAGCGAGCTC TGGGGATACG TCCAAGTTCG CCCGAAGGCG 
    CACCTGTTCT GGTGGTACTA CAAGAGCCCG CAGCGGGCGT CGTCGCCGGG 
    GAAGCCATGG CCGACCATCC TCTGGCTTCA GGGCGGCCCG GGAGCGTCGG 
    GCGTCGGGCT CGGCAACTTC CTGGAGGTCG GGCCGCTGGA CGTCAACCTG 
    AAGCCGCGCG ACTCGACGTG GCTGCAGAAG GCCGACCTCA TCTTCGTGGA 
    CAACCCGGTG GGCGTCGGGT ACAGCTACGC GGACGACCCG AGCGCGCTGG 
    TGACGACGGA CTGGCAGGCG GCCACGGACG CCACCGAGCT GCTCAGGGCG 
    CTCGCCGCCA AGGAGATACC CACCCTGCAG AGCAGCCCGC TGTTCCTCGT 
    CGCCGAGTCC TACGGCGGCA AGTACGCCGC CACGCTCGGC GTCTCCCTCG 
    CCCGGGCCAT CCGCGCCGGC GACCTCAAGC TCAACCTCGG CGGCGTGGCG 
    CTCGGCGACA ACTGGATCTC GCCGGAGGAT TTCACGCTCG CGTACACGCC 
    GCTGCTGCTG GAGGTGTCGA GGCTGGACGA CAACGCCGGC GACGAGGCCA 
    GCAAGATGGC GGCGACGGTG AAGGAGCAGA TCACGGCGGG GCAGCTTGCG 
    GACTCGCAGC AGTCGTGGAT CGACCTGCTG GGTTTCATCG ACAAAAAGAG 
    CGCCAGCGTC GACATGTACA ATTTCTTGCT TGACTCCGGC ATGGACCCGG 
    TGTCGGCAGA CTTACCGGCG GCGAGCTCCT CATCGCCGTC GTCAAGCAGT 
    GCTCAGTTGA TGAAGTACTC AACATACCTT AGCAGCCAAG CGGCCGATTC 
    AGGCTCCAAC ACGATCGAGG GCATCATGAA CGGTGTCATC AAGGAAAAGC 
    TCAAGATCAT CCCCAACAAC CTCAAGTGGC AGGAACTGTC GGATCCGGTC 
    TACAATGCGC TGGTCAACGA TTTCATGAAG CCAAGAATCA ACGAGATCGA 
    TGAGCTGCTG TCTTACGGTA TCAATGTGAC GGTCTACAAT GGTCAGCTTG 
    ATGTAATATG CTCGACGATC GGTGCAGAAG CATGGGTGAA GAAGCTCAAA 
    TGGGATGGGC TGAAGAACTT CCTGAGCCTA CCAAGGCAGC CTTTGAAGTG 
    TGGCTCTTCC AAGGGCACCA AGGCGTTCGT CAGATCATAC AAGAACCTGC 
    ATTTCTACTG GATACTTGGG GCTGGACACT TTGTACCTGC TGATCAGCCC 
    TGCATTGCAC TGAGCATGAT CAGTAGCATA ACCCAGTCTC CAGCCAGTTA 
    GATATCTCCC ATCAGTAACA GATATACTCA AGAAAAGATA GAAAACAGAA 
    GGCAAACAGA TATACCTCAC TCTCAATTAG CAGAGTGACA TTGTACCGTT 
    TCTTC

    Gene models with high sequence identity

    1. AT2G27920.1 [+] show detail - serine carboxypeptidase-like 51
      E-value: 3e-145; Score: 512.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Peptidase S10, serine carboxypeptidase 3.4e-75
    FPrintScan Peptidase S10, serine carboxypeptidase 1.3e-11
    FPrintScan Peptidase S10, serine carboxypeptidase 1.3e-11
    FPrintScan Peptidase S10, serine carboxypeptidase 1.3e-11
    FPrintScan Peptidase S10, serine carboxypeptidase 1.3e-11
    PatternScan Peptidase S10, serine carboxypeptidase, active site 0
    superfamily alpha/beta-Hydrolases 8.6e-105
    Gene3D no description 5.8e-98
    HMMPanther RETINOID-INDUCIBLE SERINE CARBOXYPEPTIDASE (S 6.7e-156
    HMMPanther Peptidase S10, serine carboxypeptidase 6.7e-156

    See the detailed result >

    AT2G27920.1

    Model type
    Protein coding
    Short Description
    serine carboxypeptidase-like 51
    Computational Description
    serine carboxypeptidase-like 51 (SCPL51); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 50 (TAIR:AT1G15000.1); Has 3757 Blast hits to 3498 proteins in 425 species: Archae - 0; Bacteria - 395; Metazoa - 679; Fungi - 928; Plants - 1340; Viruses - 0; Other Eukaryotes - 415 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR