K01010

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01010

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01010

Determination of introduced cDNA(s)

  • J023026D19 - Rice Full-length cDNAs - Original: J023026D19

    full reading [+] show sequence

    Nucleotide sequence: J023026D19 - full reading 
    TATTATTATT CTTTTGAAAA AAAGAATAGT GTTACACACA CGCGTACTCC 
    GTGCCTTCCC GTCGGAGGAA TCCCCGGTAT TCAACCGAGT CGCCCCCCAT 
    CTGAGGATTA CCACCACCTC CACGGCTCCA CCTCCGCGGC GGCGTAATCC 
    ATCCAACTCG CAATAGATAT ACAGTCCCCC CAATCGACGG AACCCTAATT 
    CTCTCCCGCA CGCGCGTCGG CGATCCGAGG GGAAGTAGGG TTTGGAGGAG 
    GAGGAGGGGA GACCACCGGA GGTAGGCGAA TCCCCCAAGG CCGGGCAAGA 
    TGGTGCTCGC GCAGCTCGGC GGGAGCATCT CCCGCGCGCT GGCGCAGATG 
    AGCAACGCCA CCGTGATCGA CGAGAAGGTG CTCAGCGACT GCCTCAACGA 
    GATCTCGCGC GCGCTCCTGC AGTCCGACGT CCAGTTCAAG ATGGTCCGCG 
    ATATGCAGTC CAACATCAAG CGCATCGTCA ACCTCGAGAC GCTCGCCGCC 
    GGGACCAACA AGCGGCGCAT CATCCAGCAG GCCGTCTTCA CGGAGCTCTG 
    CAACATGTTG GATCCCGGGA AGCCTTCCTT CACTCCCAAG AAGGGGAAAC 
    CTTGCGTGGT CATGTTCGTT GGTTTGCAAG GTTCTGGTAA AACTACTACT 
    TGTACCAAAT ATGCATATTA TCATCAGCGC AAGGGATTTA AGCCAGCACT 
    TGTTTGTGCT GATACATTTA GGGCTGGTGC TTTTGATCAG TTAAAACAGA 
    ATGCAACAAA GGCCAAGATT CCTTTTTACG GAAGCTACAT GGAGTCTGAT 
    CCAGTGAAAA TTGCTGTTGA GGGTGTGGAG AGGTTCAAGA AAGAAAACTG 
    TGATCTCATC ATTGTAGATA CGAGTGGAAG GCACAAACAA GAAGCAGCCC 
    TTTTTGAAGA AATGCGCCAA GTTTCAGAAG CGACGAAACC AGATCTGGTA 
    ATATTTGTGA TGGACAGTAG TATCGGTCAG GCTGCATTTG ATCAGGCACA 
    AGCATTTAAG CAAAGTGTTT CTGTTGGTGC TGTGATTGTC ACTAAAATGG 
    ATGGCCATGC GAAAGGAGGT GGCGCACTTA GCGCGGTTGC AGCAACAAAA 
    AGTCCAGTGA TATTTATTGG AACAGGAGAA CACATCGATG AGTTTGAAGT 
    TTTTGATGTG AAACCATTTG TCAGTCGTCT TTTAGGCATG GGAGACTGGT 
    CGGGGTTTAT GGACAAGATT CATGAAGTAG TACCCACTGA TCAACAACCT 
    GAGCTTTTGC AGAAGCTGTC TGAAGGAACC TTCACTCTGA GACTTATGTA 
    TGAGCAGTTC CAGAACATCT TGAAAATGGG TCCTATTGGC CAGGTTTTCT 
    CAATGTTGCC TGGATTTAGT TCTGAATTGA TGCCAAAGGG ACATGAGAAG 
    GAAAGCCAAG CTAAGATTAA ACGGTACATG ACGATGATGG ATTCCATGAC 
    AGATGGAGAG CTTGACAGCA CAAATCCTAA ATTGATGACT GAATCGCGTA 
    TTCTTCGGAT TGCTCGGGGA TCTGGCCGAC CTGTCAGAGA TGTTGTCGAC 
    ATGCTCGAAG AGTACAAGCG GCTTGCTAAA ATCTGGAGCA AGATGAAAGG 
    GCTCAAGATA CCAAAGAAAG GAGAAATGAG TGCACTGTCC CGCAACATGA 
    ACGTTCAGCA CATGAGCAAA GTTCTCCCGC CGCAGATGCT GAAGCAGATA 
    GGCGGCATGG GTGGCCTGCA ATCTTTGATG AAACAAATGG GCTCAAAAGA 
    AATGGGTGGC ATGTTTGGAG GCATGGGTGG TGATAAGTAA ACAGATCCTG 
    ATTGCATTTG ACAAATCGTC AGAGATATGG CTGTAGACAG ATTGTTCACC 
    AGGGTGCTAA ATGAGAGTTT TGAAGATGAT ACTGACTGCT GCAATTATGT 
    TACCAGATGA GGATACACAT GCACCCCGAT GTAAAATTTG TTTATCATAG 
    GCAAATCGTA GCTCCCCAAA GTTCTTACCG AGATTTTATT TATAGAATCT 
    GTTTGGGAAG AATTACCGAA TCCGCGTTTT GTTTTGTT

    Gene models with high sequence identity

    1. AT1G48900.1 [+] show detail - Signal recognition particle, SRP54 subunit protein
      E-value: 0; Score: 805.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Signal recognition particle, SRP54 subunit 0
    HMMSmart ATPase, AAA+ type, core 0.0022
    HMMPanther SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN 1.5e-262
    HMMPanther GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITIO 1.5e-262
    HMMPfam Signal recognition particle, SRP54 subunit, GTPase 3.6e-76
    HMMPfam Signal recognition particle, SRP54 subunit, M-domain 2.1e-26
    HMMPfam Signal recognition particle, SRP54 subunit, helical bundle 1.6e-12
    PatternScan Signal recognition particle, SRP54 subunit, GTPase 0
    superfamily P-loop containing nucleoside triphosphate hyd 1.6e-67
    superfamily Signal recognition particle, SRP54 subunit, M-domain 2.6e-40
    superfamily Signal recognition particle, SRP54 subunit, helical bundle 2.8e-19
    Gene3D Signal recognition particle, SRP54 subunit, helical bundle 2.7e-18
    Gene3D no description 6.5e-66
    Gene3D Signal recognition particle, SRP54 subunit, M-domain 1.5e-28

    See the detailed result >

    AT1G48900.1

    Model type
    Protein coding
    Short Description
    Signal recognition particle, SRP54 subunit protein
    Computational Description
    Signal recognition particle, SRP54 subunit protein; FUNCTIONS IN: 7S RNA binding, mRNA binding, nucleoside-triphosphatase activity, GTP binding, nucleotide binding; INVOLVED IN: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, M-domain (InterPro:IPR004125), Signal recognition particle, SRP54 subunit (InterPro:IPR006325), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897); BEST Arabidopsis thaliana protein match is: Signal recognition particle, SRP54 subunit protein (TAIR:AT5G49500.1); Has 17579 Blast hits to 17572 proteins in 2934 species: Archae - 472; Bacteria - 10667; Metazoa - 363; Fungi - 296; Plants - 287; Viruses - 1; Other Eukaryotes - 5493 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR