K01018

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01018

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01018

Determination of introduced cDNA(s)

  • J023078J16 - Rice Full-length cDNAs - Original: J023078J16

    full reading [+] show sequence

    Nucleotide sequence: J023078J16 - full reading
    GACATCAGCA CTGACTCCAA TAACACGCTC ATCAAACAGC GCGCGCGAGC 
    GAGGGATGGA TAGGATATTT TCGTTCGCGT TCGTGCCATC CTAAATCCCG
    TCTATAAAGC CGTGCACATC TCTATCCTCA CCTCCATTCC ATTCCACTCG
    CCAACCCGAC ACGTCTCTCA TCTTCACGCA ACGAACAGCA GCAGCAGCTC
    AAGCTAAGCT AAGCTAAAGT ACTACGTGTT CTTTCGTCTT CGTCGGCGCC
    GGAGTTTGAT TCGTCGGAGC TAGCTAGCAA GAGGAAGAAG AAAATGTTGG
    CCATATTCCA GAAGCAGGTG GCGCACGCGC CGGCGGAGCT GAACAGCCCG
    CGGAGCAGCG CGGCGAAGCC CAAGAACCCC GACGAGATCC TCAGGGACTT
    CCACGCCCTC CACCCCATCG AGGCCTTCTC CACCTCCTTC GGCGGCGGCG
    CCGCCCTCGC CTGCGTCGCC GGCCACGCCC GCAATGGCCT CTCTGGCTAC
    GAGAGGATGT TCTGTGGGCT GGATGACATC TACTGCGTGT TCATGGGGAG
    GCTGGACAAC CTGAGCAGCC TGATCCGGCA GTACGGGCTG TGCAGCCGCT
    CCACCAACGA GGCGCTGCTC GTCATCGAGG CCTACCGCAC CCTCCGCGAC
    CGCGGCCCCT ACCCCGCCGA CCAGGTCGTC AAGGATCTCT CCGGCTCCTT
    CGCCTTCGTC GTCTTCGACA ACAAGTCCGG CGCCGTCTTC GCCGCCCTGA
    GTACGGATGG GGAGGTGCCG TTGTATTGGG GGATCGCGGC GGATGGGTCG
    GTGGTGATCT GCGACGAGAG GGAGATCGTG AAGGGAGGGT GCGGCAAGTC
    GTACGCGCCG TTCCCGGTGG GGTGCATGTT CCACAGCGAG GGGGGGCTCA
    AGAGCTTCGA GCACCCGATG AACCGGCTGA AGGCGATGCC GCGGGTGGAC
    AGCGAGGGCG TCATGTGCGG CGCCACCTTC AAGGTCGACA CCTTCACCAA
    GATCAACTCC ATGCCCCGCG TCGGCAGCGC CACCAACTGG GCCGCCACCT
    GGGACGACGC TGCCGCCTGA TGATGGCGCT CCGTACGCCG TCGTCTCGTC
    GCCGTGCGCC TGCCCTCGCC GCCGGCCTCC TCGCCGTTTG CCGCCGCCGC
    TCATCTCTTC CTCCTCTTCT TCCTCCTCTC TATATCCGAT GTGCTTCTCC
    GTCCGAAGCA TGCAGATTAT TAGAGCGATA TTTGCAGCTA GCGTGGAAGC
    GCGCCAATCT ATTTTTCTGC GGTGTTTTTA CTTAATTTTC ACCTCTTCTT
    TTTAAATTTT TATGTCCATC TTTGGGCTCT CGCCTCTCGG CAATGTATAT
    TCTCGGTCGC GGGTGGCATG TCATGGTACA TACTATGAAT GATGAATAAG
    AAAGAGTTTG CTTCACTC

    Gene models with high sequence identity

    1. AT4G27450.1 [+] show detail - Aluminium induced protein with YGL and LRDR motifs
      E-value: 3e-88; Score: 322.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily N-terminal nucleophile aminohydrolases (Ntn h 4.3e-29
    Gene3D no description 4.1e-16
    HMMPanther ASPARAGINE SYNTHETASE 0.000017
    HMMPfam DUF3700 4.3e-47
    HMMPfam DUF3711 1.5e-33

    See the detailed result >

    AT4G27450.1

    Model type
    Protein coding
    Short Description
    Aluminium induced protein with YGL and LRDR motifs
    Computational Description
    Aluminium induced protein with YGL and LRDR motifs; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Aluminium induced protein with YGL and LRDR motifs (TAIR:AT3G15450.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR