K01041

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01041

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01041

Determination of introduced cDNA(s)

  • J013129E17 - Rice Full-length cDNAs - Original: J013129E17

    full reading [+] show sequence

    Nucleotide sequence: J013129E17 - full reading 
    GGTTCTCCCG CGGCTGCGCT TCCGGCTTAA ACCCTAGCTC TATGGCCGCC 
    GCCGCCGCCG CCTCCTCCAT GGCGAAGCGC AAGCAACGCA AGGCGGCGAC 
    GGAGCAGGAG GTAGAGAACC ACGACGAGGC CACTGTCGCC GCGGAGGCGG 
    GGCCCGAGAA TGACGGGCAC ACGGCGCACG CCGCCGAAGA GGCTGCGGCC 
    GCTGAGGAGG GTGTCGAGCG CGAAGGAGGA GGCGAGGGCG GCGCGGAGGG 
    GGAGGAGGGC CCGGACGCTG CAGCCAGGGG AGGTGAGGAG GGCAAGGAAG 
    AGGAGGAGAG GGAGGTGAGC TTTGACGAGC TTGGCTTGGA CGAGCAACTG 
    AAGAGGGCTT TGAGGAAGAA GGGCTTGGAC AAGGCCACCC CGATCCAGAG 
    AGAGGCCATC CCGCTCATCC TGGAAGGGAA GGATGTGGTC GCTAAGGCCA 
    AGACTGGCTC CGGAAAGACC TTTGCTTACC TTCTCCCTAT GCTGCATGAG 
    CTATTGAAGT TGTCTGCAGA AGGGCGTATC CGAAAATCTG CTCCAAATGT 
    TTTCATCCTT GTGCCAACTC GCGAGTTATG CCAGCAGGTT CATAATGAGG 
    CATCATCTCT CCTTGAATTC TGTACATCCA AATTGAAGGT TGTGCAAGTG 
    AATGCGAGCA TGTCAGACAA AGATATTAAA GTTGCATTGT CTGGCCCCCC 
    TAATATACTT GTTACAACTC CTGCTTGTGT TGCATCATGC ATATCAAAGG 
    GCATTATCCG TGGATCATCT ATCAAAGAAT CACTATCAAT GATGATTCTA 
    GACGAGGCTG ACCTCCTCCT ATCCTATCGT TGTGAAGATG ACATAAAAGC 
    TCTCGTTCCA CATATCCCAA GAAGCTGCCA GTCCATCCTG ATGTCTGCAA 
    CGTCAAGCGC TGATATTGAG AAACTGACTA AGCTACTTCT GCACAACCCT 
    TTTATTCTGA CCCTTACGGA GGTTGGTCAT GCGAAGGATG ATTTGATCCC 
    AAAAAATGTG CAGCAGTTTT GGATATCATG TGATGCTAAG GATAAGATGC 
    TTTATATCCT TGTACTCCTG AAGTTGGAGC TTATTCAGAA GAAAGTTCTC 
    ATATTTGTAA ACTCAATTGA CTCGGCATTC AAATTAAGGC TGTTTCTGGA 
    GAAGTTTGGG ATAAGATCTT CAGTGCTAAA TGCTGAATTA CCACAAAATT 
    CACGCCTCCA TATCATTCAG GCATTCAATG CTAGGCTATT TGATTATCTG 
    ATAGCAACGG ATGACAATAA GTCTAAAGAG GAGAGGCAAG CCAATAAGGG 
    AAACAAAAAG GATTCTAGGG TGTCACGCAA GCAGTTGCAG CAAACTTTAG 
    ATGCTGAATT CGGTGTTGTC AGAGGAATTG ACTTCAAAAA TGTATTCACG 
    GTAGTTAATT ATGACATGCC TCCAGATCCT GCTGGGTATG TTCACAGAGT 
    AGGAAGGACA GGGAGAGCAA ATAAAACTGG TGCATCCATA TCGCTTGTTT 
    CACCAAAGGA GAATGGCATT TTTGAAGATA TTGAAAATAT GTTGAAAGAT 
    GTTGAAAATA GAGACACCAG TTGCATTTCA CCTTTCCCAT TACTTACAAA 
    AAATGCCGTT GAGTCTTTAC GCTATAGAGC TCAGGATGTT GCCAGGAGTG 
    TGACAACCCG TGATATAAAA GAAGCACGTC GCCAAGACAT AAAGAATGAA 
    ATCCTCAACT CTGAGAAGTT GAAGGCTCAT TTTGATGAGA ATCCGAGAGA 
    CCTTGATTTG CTCAAACATG ATAAGTTATT GAGCAACAAG GAAATCCCTG 
    CACACCTACG TGATGTCCCT GAGTACCTTA TTGATCCCAC AACAAAAGAA 
    GCAAGCAATG TAGTCAAACT TTCAAGGGCT GCTATGGATA TCGATAAGCC 
    ACGGAGGAGG AAAAGAATGG GATTCAAGGG AGGATCTGGC AGAAGTAGTG 
    ATCCCCTTAA GACTTTCTCT GCTGAGGGGA AATCACGGAG GCGAGGGAGG 
    AAGGAAAGAG ACGGAGAACA GGATAGAAGA AAGAGGAAGA AGGTGGAAAG 
    CTAATCTTTT GTGAAGCGTT CACTGCCAAG TGCGCACAGT TTTGTAGGTT 
    TCTGGTATCT CGTCCTGTAA CTTTGTAGCA TCTCCAGATA TAGGGGGATA 
    ACAATGTCAA GCTTTACTGG ATGCTGCGTG TGCTATGCTA TGCACACCAT 
    TATATAGACA GACGAGTAGA GAGTTTGTTT

    Gene models with high sequence identity

    1. AT4G34910.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
      E-value: 7e-167; Score: 584.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Helicase, superfamily 1/2, ATP-binding domain 27.378
    ProfileScan DNA/RNA helicase, C-terminal 14.482
    ProfileScan RNA helicase, DEAD-box type, Q motif 10.697
    HMMPfam DNA/RNA helicase, DEAD/DEAH box type, N-terminal 5.3e-39
    HMMPfam DNA/RNA helicase, C-terminal 1.3e-24
    HMMSmart DEAD-like helicase, N-terminal 9.3e-42
    HMMSmart DNA/RNA helicase, C-terminal 4.1e-21
    superfamily P-loop containing nucleoside triphosphate hyd 2.9e-48
    superfamily P-loop containing nucleoside triphosphate hyd 9.4e-35
    HMMPanther DEAD (ASP-GLU-ALA-ASP) BOX POLYPEPTIDE 56 3.3e-220
    HMMPanther DEAD BOX ATP-DEPENDENT RNA HELICASE 3.3e-220
    Gene3D no description 6.4e-52
    Gene3D no description 1.6e-34
    Coil coiled-coil 0

    See the detailed result >

    AT4G34910.1

    Model type
    Protein coding
    Short Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Computational Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP binding, nucleic acid binding, ATP-dependent helicase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 35246 Blast hits to 34671 proteins in 2939 species: Archae - 524; Bacteria - 16250; Metazoa - 5646; Fungi - 4238; Plants - 2336; Viruses - 4; Other Eukaryotes - 6248 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR