K01043

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01043

Determination of introduced cDNA(s)

J033028M15 - Rice Full-length cDNAs - Original: J033028M15

full reading [+] show sequence

GATCCTTTTC TTCCCTACCC AGCCGTCACG CACTCACGCT TCCTCCGGCG 
GCGGCAAGGC GACGGCATCG GCGGCCAAGG CGCGGGCGGC GGCGGCGGCG 
GCGAGCAAGG TGCAGGCGAC GTCATCGGCA ACCAAGGCGC GGGCGGCGGC 
GGCGGCGGAA GCGGGAGGCG GAGGAGTGGG AGAGGCGGAA GAGGGGGAGG 
AGGAGGAGGA GGCGGCAGAG ACGAGAGGAC CCCGTGGATG TGCTCGGGGA 
GGAGGTGATG GGGCGGGTGA TGGAGCTCCT GGACGCACGC AGCACCTGGC 
GCTGGGTCGC CGCCGACGAC CGCCTCTGGG CACCCAAGGC TTATTTGATG 
AGAGCTGGGG CTGTCATTCA TAGCCATGGG ATGGAAACTT GCATTGCAAC 
CATGCTTAAT ACTGGTGCAA AAGAGTTTAG GGTGAACCTA CTTGTCTCTT 
TTCCCCATGA ATCTTAGCTA ATGCTCCAGT TCTGCTTTAT ATTTCTCATG 
AAGTTAGCTG TAATGTTTAC AGAAATGTGG TAGTACTAAG AAAATGCACT 
ATTTCTCATG TAGTGTACCA CATTATGGAC ATTTTTCTGT CTGATCTAAT 
GTATCAAATT GAAAAACGGA TAATTGTTCA TATTTTTAGA TTTCCGCTTA 
CTTTTCCATT ACAAGAACTT CAATGGTATT AACAATTAAG TGCTAATCTT 
CTATATGATG CACTATTCAA TAAAATTGGA GATTATGTTT GCTCCATTTC 
CTTTTCATTT CATGGCAGAC ATTATTATAT ATGTACTAGA AAGAGTGGTG 
AACATTTTTT TTTAAGATTT GATCTATTAT TGATTTCACA CAGACATGCA 
TCAGCTATCA GGACCAGTTG GAATAATTGA AATGCTAATT GAGAACTTTG 
CATGCACCAC ATAGTACAGC AACTACTCAA GCCAAGTTCT ATTTACTAGT 
GAAGCCATTT CCAACTTATA TCAATCCATT TATTAGGAAT ATGCATGTAC 
ATTGTGTGTT TACTGAGTTT TTACTTGTAG AATGTACCAT CCTAGTATAA 
TTATTTTAAA TAAAACTCCC TTAGTTGATC TCTGCAAATT AGGTGGCTAG 
CTGTCCTTGC AGTGAGTTGT CGTAGTACAA ATTTGAAACA GTCTTCGGGC 
TTCAGATTTT CCATCTACAT TAATTATGAA AATGTCACCT ACATACATCT 
CAATTCTAAT ATAAGTTAAC ATTTGCAAGT GGGAGCCAAT TAAACTGTAC 
TTCAGCACTT ATCTTCTTTT TATTTATTTA CTAGCTATGA TTTGCGACCT 
GTGGGTGAGC AATCAACTTC TTGCTGAAGT GTCAGAGAAG GGTACCTGAA 
GGAACAGAAG ATCAACACTA ACTTAAAGGC TCATACATCA TGTAAGCTAA 
AATCAGTTTG TTCCCATAGT TTGTGAGATA AATTGCAATC CTTGCTGCTT 
GTAAATTGTA ATTGAATCTG TTACGATTGC AATTATACTG CTTCAACATA 
AATTTCTCAT AAAATGGAAC TGGTAATTTA ATATTGGTGG ATTGTGAGAA 
TATCGAAGCT ATGCTACAGA TTGAATTAAA TGGAACTACA TCAGTTATGT 
TATTGACACT TATCCTGCAC ATTTGACACT GATCTTCAAT TCTGTATTGA 
AATAGTAGGT GTTGCATAGA TTACTTATCA TTAAATGGAG TATTATTATA 
ATCTATATAT CTGACCCTTA ATACTTTTGT CTTTCTGATA ATCTGATTCA 
AGTTTTTAGA TGCTCAACTT ATCATGGCGG TCACAAGATA TTTTGGAGTG 
GCATTTCTCT ACAAGGGAAA TGCCTTGCCT GTTGTAGATT TGCCATCGTT 
TTGTCTCATT TTGTAGATTG TATAGGAGAA TTTCTCTTTT TGTACAACTA 
ACCTATGTAC ATGGCATTTG TAATTAAATG GAATTGGTAT ATTCAGTACT

Gene models with high sequence identity

AT5G53850.3 [+] show detail - haloacid dehalogenase-like hydrolase family protein
E-value: 6e-07; Score: 53.10

InterPro Scan Digest

See the detailed result >

AT5G53850.3

Model type: Protein coding
Short Description: haloacid dehalogenase-like hydrolase family protein
Computational Description: haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, ion binding, methylthioribulose 1-phosphate dehydratase activity, metal ion binding; INVOLVED IN: L-methionine salvage; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Class II aldolase/adducin, N-terminal (InterPro:IPR001303), Methylthioribulose-1-phosphate dehydratase (InterPro:IPR017714); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR