K01043

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01043

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01043

Determination of introduced cDNA(s)

  • J033028M15 - Rice Full-length cDNAs - Original: J033028M15

    full reading [+] show sequence

    Nucleotide sequence: J033028M15 - full reading
    GATCCTTTTC TTCCCTACCC AGCCGTCACG CACTCACGCT TCCTCCGGCG 
    GCGGCAAGGC GACGGCATCG GCGGCCAAGG CGCGGGCGGC GGCGGCGGCG
    GCGAGCAAGG TGCAGGCGAC GTCATCGGCA ACCAAGGCGC GGGCGGCGGC
    GGCGGCGGAA GCGGGAGGCG GAGGAGTGGG AGAGGCGGAA GAGGGGGAGG
    AGGAGGAGGA GGCGGCAGAG ACGAGAGGAC CCCGTGGATG TGCTCGGGGA
    GGAGGTGATG GGGCGGGTGA TGGAGCTCCT GGACGCACGC AGCACCTGGC
    GCTGGGTCGC CGCCGACGAC CGCCTCTGGG CACCCAAGGC TTATTTGATG
    AGAGCTGGGG CTGTCATTCA TAGCCATGGG ATGGAAACTT GCATTGCAAC
    CATGCTTAAT ACTGGTGCAA AAGAGTTTAG GGTGAACCTA CTTGTCTCTT
    TTCCCCATGA ATCTTAGCTA ATGCTCCAGT TCTGCTTTAT ATTTCTCATG
    AAGTTAGCTG TAATGTTTAC AGAAATGTGG TAGTACTAAG AAAATGCACT
    ATTTCTCATG TAGTGTACCA CATTATGGAC ATTTTTCTGT CTGATCTAAT
    GTATCAAATT GAAAAACGGA TAATTGTTCA TATTTTTAGA TTTCCGCTTA
    CTTTTCCATT ACAAGAACTT CAATGGTATT AACAATTAAG TGCTAATCTT
    CTATATGATG CACTATTCAA TAAAATTGGA GATTATGTTT GCTCCATTTC
    CTTTTCATTT CATGGCAGAC ATTATTATAT ATGTACTAGA AAGAGTGGTG
    AACATTTTTT TTTAAGATTT GATCTATTAT TGATTTCACA CAGACATGCA
    TCAGCTATCA GGACCAGTTG GAATAATTGA AATGCTAATT GAGAACTTTG
    CATGCACCAC ATAGTACAGC AACTACTCAA GCCAAGTTCT ATTTACTAGT
    GAAGCCATTT CCAACTTATA TCAATCCATT TATTAGGAAT ATGCATGTAC
    ATTGTGTGTT TACTGAGTTT TTACTTGTAG AATGTACCAT CCTAGTATAA
    TTATTTTAAA TAAAACTCCC TTAGTTGATC TCTGCAAATT AGGTGGCTAG
    CTGTCCTTGC AGTGAGTTGT CGTAGTACAA ATTTGAAACA GTCTTCGGGC
    TTCAGATTTT CCATCTACAT TAATTATGAA AATGTCACCT ACATACATCT
    CAATTCTAAT ATAAGTTAAC ATTTGCAAGT GGGAGCCAAT TAAACTGTAC
    TTCAGCACTT ATCTTCTTTT TATTTATTTA CTAGCTATGA TTTGCGACCT
    GTGGGTGAGC AATCAACTTC TTGCTGAAGT GTCAGAGAAG GGTACCTGAA
    GGAACAGAAG ATCAACACTA ACTTAAAGGC TCATACATCA TGTAAGCTAA
    AATCAGTTTG TTCCCATAGT TTGTGAGATA AATTGCAATC CTTGCTGCTT
    GTAAATTGTA ATTGAATCTG TTACGATTGC AATTATACTG CTTCAACATA
    AATTTCTCAT AAAATGGAAC TGGTAATTTA ATATTGGTGG ATTGTGAGAA
    TATCGAAGCT ATGCTACAGA TTGAATTAAA TGGAACTACA TCAGTTATGT
    TATTGACACT TATCCTGCAC ATTTGACACT GATCTTCAAT TCTGTATTGA
    AATAGTAGGT GTTGCATAGA TTACTTATCA TTAAATGGAG TATTATTATA
    ATCTATATAT CTGACCCTTA ATACTTTTGT CTTTCTGATA ATCTGATTCA
    AGTTTTTAGA TGCTCAACTT ATCATGGCGG TCACAAGATA TTTTGGAGTG
    GCATTTCTCT ACAAGGGAAA TGCCTTGCCT GTTGTAGATT TGCCATCGTT
    TTGTCTCATT TTGTAGATTG TATAGGAGAA TTTCTCTTTT TGTACAACTA
    ACCTATGTAC ATGGCATTTG TAATTAAATG GAATTGGTAT ATTCAGTACT

    Gene models with high sequence identity

    1. AT5G53850.3 [+] show detail - haloacid dehalogenase-like hydrolase family protein
      E-value: 6e-07; Score: 53.10

     

    InterPro Scan Digest

    See the detailed result >

    AT5G53850.3

    Model type
    Protein coding
    Short Description
    haloacid dehalogenase-like hydrolase family protein
    Computational Description
    haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, ion binding, methylthioribulose 1-phosphate dehydratase activity, metal ion binding; INVOLVED IN: L-methionine salvage; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Class II aldolase/adducin, N-terminal (InterPro:IPR001303), Methylthioribulose-1-phosphate dehydratase (InterPro:IPR017714); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR