K01043

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01043

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01043

Determination of introduced cDNA(s)

  • J033028M15 - Rice Full-length cDNAs - Original: J033028M15

    full reading [+] show sequence

    Nucleotide sequence: J033028M15 - full reading 
    GATCCTTTTC TTCCCTACCC AGCCGTCACG CACTCACGCT TCCTCCGGCG 
    GCGGCAAGGC GACGGCATCG GCGGCCAAGG CGCGGGCGGC GGCGGCGGCG 
    GCGAGCAAGG TGCAGGCGAC GTCATCGGCA ACCAAGGCGC GGGCGGCGGC 
    GGCGGCGGAA GCGGGAGGCG GAGGAGTGGG AGAGGCGGAA GAGGGGGAGG 
    AGGAGGAGGA GGCGGCAGAG ACGAGAGGAC CCCGTGGATG TGCTCGGGGA 
    GGAGGTGATG GGGCGGGTGA TGGAGCTCCT GGACGCACGC AGCACCTGGC 
    GCTGGGTCGC CGCCGACGAC CGCCTCTGGG CACCCAAGGC TTATTTGATG 
    AGAGCTGGGG CTGTCATTCA TAGCCATGGG ATGGAAACTT GCATTGCAAC 
    CATGCTTAAT ACTGGTGCAA AAGAGTTTAG GGTGAACCTA CTTGTCTCTT 
    TTCCCCATGA ATCTTAGCTA ATGCTCCAGT TCTGCTTTAT ATTTCTCATG 
    AAGTTAGCTG TAATGTTTAC AGAAATGTGG TAGTACTAAG AAAATGCACT 
    ATTTCTCATG TAGTGTACCA CATTATGGAC ATTTTTCTGT CTGATCTAAT 
    GTATCAAATT GAAAAACGGA TAATTGTTCA TATTTTTAGA TTTCCGCTTA 
    CTTTTCCATT ACAAGAACTT CAATGGTATT AACAATTAAG TGCTAATCTT 
    CTATATGATG CACTATTCAA TAAAATTGGA GATTATGTTT GCTCCATTTC 
    CTTTTCATTT CATGGCAGAC ATTATTATAT ATGTACTAGA AAGAGTGGTG 
    AACATTTTTT TTTAAGATTT GATCTATTAT TGATTTCACA CAGACATGCA 
    TCAGCTATCA GGACCAGTTG GAATAATTGA AATGCTAATT GAGAACTTTG 
    CATGCACCAC ATAGTACAGC AACTACTCAA GCCAAGTTCT ATTTACTAGT 
    GAAGCCATTT CCAACTTATA TCAATCCATT TATTAGGAAT ATGCATGTAC 
    ATTGTGTGTT TACTGAGTTT TTACTTGTAG AATGTACCAT CCTAGTATAA 
    TTATTTTAAA TAAAACTCCC TTAGTTGATC TCTGCAAATT AGGTGGCTAG 
    CTGTCCTTGC AGTGAGTTGT CGTAGTACAA ATTTGAAACA GTCTTCGGGC 
    TTCAGATTTT CCATCTACAT TAATTATGAA AATGTCACCT ACATACATCT 
    CAATTCTAAT ATAAGTTAAC ATTTGCAAGT GGGAGCCAAT TAAACTGTAC 
    TTCAGCACTT ATCTTCTTTT TATTTATTTA CTAGCTATGA TTTGCGACCT 
    GTGGGTGAGC AATCAACTTC TTGCTGAAGT GTCAGAGAAG GGTACCTGAA 
    GGAACAGAAG ATCAACACTA ACTTAAAGGC TCATACATCA TGTAAGCTAA 
    AATCAGTTTG TTCCCATAGT TTGTGAGATA AATTGCAATC CTTGCTGCTT 
    GTAAATTGTA ATTGAATCTG TTACGATTGC AATTATACTG CTTCAACATA 
    AATTTCTCAT AAAATGGAAC TGGTAATTTA ATATTGGTGG ATTGTGAGAA 
    TATCGAAGCT ATGCTACAGA TTGAATTAAA TGGAACTACA TCAGTTATGT 
    TATTGACACT TATCCTGCAC ATTTGACACT GATCTTCAAT TCTGTATTGA 
    AATAGTAGGT GTTGCATAGA TTACTTATCA TTAAATGGAG TATTATTATA 
    ATCTATATAT CTGACCCTTA ATACTTTTGT CTTTCTGATA ATCTGATTCA 
    AGTTTTTAGA TGCTCAACTT ATCATGGCGG TCACAAGATA TTTTGGAGTG 
    GCATTTCTCT ACAAGGGAAA TGCCTTGCCT GTTGTAGATT TGCCATCGTT 
    TTGTCTCATT TTGTAGATTG TATAGGAGAA TTTCTCTTTT TGTACAACTA 
    ACCTATGTAC ATGGCATTTG TAATTAAATG GAATTGGTAT ATTCAGTACT

    Gene models with high sequence identity

    1. AT5G53850.3 [+] show detail - haloacid dehalogenase-like hydrolase family protein
      E-value: 0.0000006; Score: 53.10

     

    InterPro Scan Digest

    See the detailed result >

    AT5G53850.3

    Model type
    Protein coding
    Short Description
    haloacid dehalogenase-like hydrolase family protein
    Computational Description
    haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, ion binding, methylthioribulose 1-phosphate dehydratase activity, metal ion binding; INVOLVED IN: L-methionine salvage; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Class II aldolase/adducin, N-terminal (InterPro:IPR001303), Methylthioribulose-1-phosphate dehydratase (InterPro:IPR017714); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR