K01047

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	abnormal (PATO:0000460) (Rosette leaf::Others)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin)
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01047

Determination of introduced cDNA(s)

J033089L09 - Rice Full-length cDNAs - Original: J033089L09

full reading [+] show sequence

GGCTCTTTCC TTTCCCCGAA TGTTAATCTT CAGGAGCTAG CTGCACGGAC 
AAAGAACTAC AGTGGAGCAG AGCTGGAAGG TGTCGTCAAA AGTGCAGTCT 
CATATGCTTT GAACAGGCAG ATAAGCATGG ATGACCTTAC CAAGCCTTTG 
GATGAAGAAA GCATTAAGGT TACTATGGAT GATTTTGTGA ATGCACTTCA 
TGAAATTACC CCTGCATTTG GTGCTTCCAC TGATGACCTT GAAAGATGCA 
GGCTAAGGGG TATGGTTGAT TGTGGCAAGG CACATAGGCA CTTGTATGAG 
AGAGGTATGC TTCTTGTTGA GCAAGTTAAA GTTAGCAAAG GTAGTCCACT 
TGTGACATGC CTCTTGGAAG GTCCTGCTGG AAGTGGTAAA TCGGCTTTGG 
CTGCTACTGT TGGCATTGAC AGTGATTTTG CTTACGTCAA AATTATATCA 
GCAGAGACAA TGATTGGTTT CAGTGAAAGC AGCAAATGTG CACAGATTTG 
CAAGGTTTTT GAGGATGCAT ACAAATCTCA GTTTGGCATC ATAATTCTAG 
ATGACATCGA AAGGTTACTG GAATATGTTG CCATTGGACC ACGCTTTTCA 
AACATAATCT CACAAACTCT ACTAGTCCTT CTCAAGAGGG TTCCTCCTAA 
GGGCAAGAAC TTGCTTGTTA TTGGAACAAC AAGTGAAGTA GGCTTTCTAG 
AATCCATTGG TATGTGCGAC GTGTTCTCCG TGACATACCA TGTCCCCAAA 
CTGAAAAAGG AGGATGCTAC AAAGGTGTTG CGGCATCTCA ATGTGTTCGA 
TGAAGCGGAC ATTGATGCGG CTGCAGAAGC ACTGGACGAT ATGCCAATCA 
AGAAGCTGTA CACACTCGTT GAGATGGCTG CACAAGGGCC ATCAGGAGGA 
AGCGCGGAAG CAGTCTATGG TGGAGAGGAA AAGATAGATA TCAACCACTT 
CTTTAGCATC TTGAGTGATA TTATCCGCTA TTAACTACAC GGCGTCGGAA 
TGAACCCTAG GTGACACCAT AGGAATTTAA TTGCACATTT CTTCTTACTT 
CAAGTTCTCC CTTTTGCCAC CGTCGCCAGG GTATAGGGTT GTTTGATCTT 
TGAGGTTCGT GTCTCCTTGT TGTGCCGCTT TGAGCTTTTG TTGGAATGTT 
GTTATGATTC GGACAGAGGT TATACCTTAC ACGATGTAGC ATGTTTCAAC 
CGTATGTTTC GATACTTTCC CAGCACAGAG TTGCACG

Gene models with high sequence identity

AT4G04910.1 [+] show detail - AAA-type ATPase family protein
E-value: 1e-128; Score: 456.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	3.3e-08
Gene3D	no description	7e-37
HMMSmart	ATPase, AAA+ type, core	6.2e-07
HMMPfam	ATPase, AAA-type, core	3.1e-10
superfamily	P-loop containing nucleoside triphosphate hyd	8.6e-32
superfamily	P-loop containing nucleoside triphosphate hyd	1.1e-06
HMMPanther	VESICULAR-FUSION PROTEIN NSF	1.5e-147

See the detailed result >

AT4G04910.1

Model type: Protein coding
Short Description: AAA-type ATPase family protein
Curator Summary: N-ethylmaleimide sensitive factor
Computational Description: N-ethylmaleimide sensitive factor (NSF); FUNCTIONS IN: protein binding; LOCATED IN: vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30539 Blast hits to 27448 proteins in 3106 species: Archae - 1540; Bacteria - 10808; Metazoa - 4854; Fungi - 3637; Plants - 2891; Viruses - 27; Other Eukaryotes - 6782 (source: NCBI BLink).
Link: InterPro Scan - TAIR