K01047

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01047

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01047

Determination of introduced cDNA(s)

  • J033089L09 - Rice Full-length cDNAs - Original: J033089L09

    full reading [+] show sequence

    Nucleotide sequence: J033089L09 - full reading
    GGCTCTTTCC TTTCCCCGAA TGTTAATCTT CAGGAGCTAG CTGCACGGAC 
    AAAGAACTAC AGTGGAGCAG AGCTGGAAGG TGTCGTCAAA AGTGCAGTCT
    CATATGCTTT GAACAGGCAG ATAAGCATGG ATGACCTTAC CAAGCCTTTG
    GATGAAGAAA GCATTAAGGT TACTATGGAT GATTTTGTGA ATGCACTTCA
    TGAAATTACC CCTGCATTTG GTGCTTCCAC TGATGACCTT GAAAGATGCA
    GGCTAAGGGG TATGGTTGAT TGTGGCAAGG CACATAGGCA CTTGTATGAG
    AGAGGTATGC TTCTTGTTGA GCAAGTTAAA GTTAGCAAAG GTAGTCCACT
    TGTGACATGC CTCTTGGAAG GTCCTGCTGG AAGTGGTAAA TCGGCTTTGG
    CTGCTACTGT TGGCATTGAC AGTGATTTTG CTTACGTCAA AATTATATCA
    GCAGAGACAA TGATTGGTTT CAGTGAAAGC AGCAAATGTG CACAGATTTG
    CAAGGTTTTT GAGGATGCAT ACAAATCTCA GTTTGGCATC ATAATTCTAG
    ATGACATCGA AAGGTTACTG GAATATGTTG CCATTGGACC ACGCTTTTCA
    AACATAATCT CACAAACTCT ACTAGTCCTT CTCAAGAGGG TTCCTCCTAA
    GGGCAAGAAC TTGCTTGTTA TTGGAACAAC AAGTGAAGTA GGCTTTCTAG
    AATCCATTGG TATGTGCGAC GTGTTCTCCG TGACATACCA TGTCCCCAAA
    CTGAAAAAGG AGGATGCTAC AAAGGTGTTG CGGCATCTCA ATGTGTTCGA
    TGAAGCGGAC ATTGATGCGG CTGCAGAAGC ACTGGACGAT ATGCCAATCA
    AGAAGCTGTA CACACTCGTT GAGATGGCTG CACAAGGGCC ATCAGGAGGA
    AGCGCGGAAG CAGTCTATGG TGGAGAGGAA AAGATAGATA TCAACCACTT
    CTTTAGCATC TTGAGTGATA TTATCCGCTA TTAACTACAC GGCGTCGGAA
    TGAACCCTAG GTGACACCAT AGGAATTTAA TTGCACATTT CTTCTTACTT
    CAAGTTCTCC CTTTTGCCAC CGTCGCCAGG GTATAGGGTT GTTTGATCTT
    TGAGGTTCGT GTCTCCTTGT TGTGCCGCTT TGAGCTTTTG TTGGAATGTT
    GTTATGATTC GGACAGAGGT TATACCTTAC ACGATGTAGC ATGTTTCAAC
    CGTATGTTTC GATACTTTCC CAGCACAGAG TTGCACG

    Gene models with high sequence identity

    1. AT4G04910.1 [+] show detail - AAA-type ATPase family protein
      E-value: 1e-128; Score: 456.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 3.3e-08
    Gene3D no description 7e-37
    HMMSmart ATPase, AAA+ type, core 6.2e-07
    HMMPfam ATPase, AAA-type, core 3.1e-10
    superfamily P-loop containing nucleoside triphosphate hyd 8.6e-32
    superfamily P-loop containing nucleoside triphosphate hyd 1.1e-06
    HMMPanther VESICULAR-FUSION PROTEIN NSF 1.5e-147

    See the detailed result >

    AT4G04910.1

    Model type
    Protein coding
    Short Description
    AAA-type ATPase family protein
    Curator Summary
    N-ethylmaleimide sensitive factor
    Computational Description
    N-ethylmaleimide sensitive factor (NSF); FUNCTIONS IN: protein binding; LOCATED IN: vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30539 Blast hits to 27448 proteins in 3106 species: Archae - 1540; Bacteria - 10808; Metazoa - 4854; Fungi - 3637; Plants - 2891; Viruses - 27; Other Eukaryotes - 6782 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR