K01105

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01105

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01105

Determination of introduced cDNA(s)

  • J033069K12 - Rice Full-length cDNAs - Original: J033069K12

    full reading [+] show sequence

    Nucleotide sequence: J033069K12 - full reading
    GTGAAGCCAC AACGGCCAAG CAGAAAGTGC AATTAGCCTG CAGGCAGCTA 
    ATCAGTAGTA GCTTGCTAGC CATGGCTTCT GCAACTAATT CTTCACTTAG
    CTTAATGCTG CTGGTGGCTG CAGCTATGGC GTCAGTGGCA TCGGCGCAGC
    TCTCGGCGAC GTTCTATGAC ACGTCGTGCC CCAATGCGTT GTCCACCATC
    AAGAGCGTCA TAACAGCCGC CGTGAACAGC GAGGCTCGCA TGGGGGCGTC
    GCTGCTCAGG CTGCACTTCC ACGACTGCTT CGTCCAAGGG TGCGACGCGT
    CAGTTCTGCT GTCCGGGCAG GAGCAGAATG CTGGCCCGAA CGTGGGGTCG
    CTGAGGGGAT TCAGCGTCAT CGACAACGCC AAGGCGCGGG TGGAGGCCAT
    CTGCAACCAG ACCGTCTCCT GCGCCGACAT CCTCGCCGTC GCCGCCCGTG
    ACTCCGTCGT CGCGCTGGGA GGGCCATCAT GGACGGTTCT GTTGGGGAGA
    AGGGACTCCG CCACTGCAAG CGAGGCCTTG GCAAATACCG ACCTCCCTGC
    CCCTTCCTCT AGCCTCGCAG AACTTATCGG CAATTTCTCC AGAAAGGGAC
    TCGACGCAAC CGACATGGTT GCTCTCTCAG GAGCACACAC GATCGGGCAG
    GCGCAGTGCC AGAATTTCAG GGACAGGATC TACAACGAGA CCAACATCGA
    TTCCGCCTTC GCGACGCAAC GCCAGGCCAA CTGCCCACGG CCGACGGGCA
    GCGGCGACAG CAACCTGGCG CCGCTGGACA CGACGACGCC CAACGCCTTC
    GACAACGCCT ACTACAGCAA CCTGCTGTCC AACAAGGGGC TCCTGCACTC
    CGACCAGGTG CTCTTCAACG GCGGCAGCGC GGACAACACG GTCAGGAACT
    TCGCGTCCAA CGCGGCGGCG TTCAGCAGCG CCTTCACGAC GGCCATGGTG
    AAGATGGGGA ACATCTCGCC GCTGACCGGG ACGCAGGGGC AGATCAGGCT
    CAGCTGCTCC AAGGTGAACT CCTAATTAAG GAGTAGTATG ACGGGATGCG
    TTCGTTGCTG GAAGCAAATC TTGTCGACGA CGACATAAAC GGGCCACACC
    ACATATACCC ATATATGTAG TATAACCACA AGTATAGGTA CGGTGGTGTT
    GTACTAGTAC ACGTAAAGTA TATGGCAGCC AGCTCGCTCT AGCAATCCAT
    CAAGTGTATG GAGCAGAGCA GCCATGGCAT TAGCACCTAG TATACCAAAA
    TAAAAGCTCC TCATGCGAAG GCATGCATGG AGGATTAATG

    Gene models with high sequence identity

    1. AT5G05340.1 [+] show detail - Peroxidase superfamily protein
      E-value: 7e-102; Score: 367.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Haem peroxidase 1e-110
    ProfileScan Haem peroxidase, plant/fungal/bacterial 74.411
    PatternScan Peroxidases heam-ligand binding site 0
    PatternScan Peroxidase, active site 0
    FPrintScan Plant peroxidase 1.3e-72
    FPrintScan Plant peroxidase 1.3e-72
    FPrintScan Plant peroxidase 1.3e-72
    FPrintScan Plant peroxidase 1.3e-72
    FPrintScan Plant peroxidase 1.3e-72
    FPrintScan Plant peroxidase 1.3e-72
    FPrintScan Plant peroxidase 1.3e-72
    FPrintScan Plant peroxidase 1.3e-72
    FPrintScan Plant peroxidase 1.3e-72
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.9e-36
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.9e-36
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.9e-36
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.9e-36
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.9e-36
    Gene3D no description 3.9e-57
    HMMPfam Haem peroxidase, plant/fungal/bacterial 2.7e-80

    See the detailed result >

    AT5G05340.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Computational Description
    Peroxidase superfamily protein; FUNCTIONS IN: protein binding, peroxidase activity; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G58400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR