K01109

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01109

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01109

Determination of introduced cDNA(s)

J023008O22 - Rice Full-length cDNAs - Original: J023008O22

full reading [+] show sequence

GACTCTTCCT CCTCCTCCCT CCTCGCCGGA GCTTGGCTGA GCTTGAGCTG 
AGCTGAGCTG ATCGGCGGCG GCAATGGCGG GCGGCGCGAT GGTCCAGACG 
GTGGGTGGCA AGACGTACCC GGGGAAGATG ACCGCGTTCG TGTTCTTCAC 
CTGCCTCGTC GCCTCCTCCG GCGGCCTCAT CTTCGGCTAC GACATCGGCA 
TCTCCGGCGG CGTCACCTCC ATGGACTCCC TCCTCAGCGA GTTCTTCCCG 
TCGGTGTACG CGCAGGCGAA GGCGAGCAAG GACACCAACC AGTACTGCAA 
GTTCGACAGC CAGCTGCTGA CGCTCTTCAC CTCGTCGCTG TACCTGGCGG 
CGCTGGCGAC GTCGTTCGTG GCGGCGTGGG TCACCCGGGT GTTCGGCCGG 
AAGTGGTCCA TGTTCTGCGG CGGCGTCACC TTCCTCGCCG GCTCGGCGCT 
CAACGGCGCC GCCACCGACG TCATGATGCT CATCCTCGGC CGCATCCTCC 
TCGGCATCGG CGTCGGCTTC GCCAACCAGT CCGTGCCGCT CTACCTGTCG 
GAGATGGCGC CGGCGAACCT CCGCGGGATG CTCAACATCG GCTTCCAGCT 
CATGACCACC ATCGGCATCC TCTCCGCCAA CCTCATCAAC TACGCGACGT 
CGAGCATCGA GGGCGGGTGG GGGTGGCGCA TCGGCCTCGG CCTCGCCGGC 
GTGCCCGCGC TCATCATCAC GCTCGGCGCG CTCGTCCTCC CGGACACCCC 
AAACTCCCTC ATCGCCCGCG GCTACGCCGG CGACGCCAAG CGCGTCCTCG 
TCAAGATCCG CGGCACGGAC GACGTCCACG ACGAGTACGA CGACATGGTA 
GCGGCAAGCG AAGAAGCCGC CTCGATCGAG CACCCATGGC GGAACATCCT 
CCATCGCAAG TACCGCCCGC AGCTCACCAT CGCCATCCTC ATCCCGTGCT 
TCCAACAGCT CACCGGCATC AACGTGATCA TGTTCTACGC GCCGGTGCTC 
TTCCTCACCA TCGGCTTCGC CGGCGACGCG TCGCTCATGT CCGCCGTGAT 
CACGGGCCTC GTCAACATGT TCGCCACCGT CGTCTCGATC ATCTCCGTGG 
ACCGCCTCGG CCGCCGCGTG CTGTTCCTCC AGGGCGGCAC GCAGATGTTC 
ATCTCCCAGG TGGTGGTCGG GACGCTGATC GCGCTCCAGT TCGGCGTCGC 
GGGCGTCGGC GAGATGTCGC GGTCGTACGC CATCTTGCTC GTGCTGTTCA 
TCTGCATGTA CGTGGCCGGG TTCGCGTGGT CGTGGGGGCC CCTGGGGTGG 
CTGGTGCCGA GCGAGGTGTT CGCGCTGGAG ATCAGGTCGG CGGGGCAGAG 
CATCGCGGTG TGCGTCAACA TGATGCTGAC GTTCGTCATC GGGCAGGCGT 
TCCTCACCAT GCTGTGCCAC CTCAAGTTCG GCCTCTTCTA CTTCTTCGCC 
GGGTGGATGC TGGTCATGAC CACCTTCGTC GCGCTCTTCC TGCCGGAGAC 
GAAGGGGGTG CCCATCGAGG AGATGAACCA CGTCTGGAGC CGGCACTGGT 
TCTGGGGCAG CTACGTCACC GCCCACGACG TCGCCGGCGC CGGCGCCGGA 
GGAGGAGGAA ACCGCAGAAG CCACAACGTC TAGCTCTTAC ATATACTATT 
ACCGTTTACG AGTTACGCGA GAGAGAGAGA ATTAATGGGT AGGTTGTGTA 
ATTAGGTAAT GCAAGAATTA ATTAAACCAA TTAATTTCAA GGG

Gene models with high sequence identity

AT1G11260.1 [+] show detail - sugar transporter 1
E-value: 0; Score: 643.00

InterPro Scan Digest

Program	Description	E-value
PatternScan	Sugar transporter, conserved site	0
PatternScan	Sugar transporter, conserved site	0
superfamily	Major facilitator superfamily, general substrate transporter	3.1e-55
FPrintScan	Sugar/inositol transporter	1.8e-31
FPrintScan	Sugar/inositol transporter	1.8e-31
FPrintScan	Sugar/inositol transporter	1.8e-31
FPrintScan	Sugar/inositol transporter	1.8e-31
FPrintScan	Sugar/inositol transporter	1.8e-31
HMMPanther	MONOSACCHARIDE TRANSPORTER, PLANT	4.9e-222
HMMPanther	SUGAR TRANSPORTER	4.9e-222
ProfileScan	MFS	44.407
HMMTigr	Sugar/inositol transporter	3e-108
HMMPfam	General substrate transporter	1.8e-125

See the detailed result >

AT1G11260.1

Model type: Protein coding
Short Description: sugar transporter 1
Curator Summary: Encodes a H+/hexose cotransporter.
Computational Description: sugar transporter 1 (STP1); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: nucleus, plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter protein 12 (TAIR:AT4G21480.1); Has 29569 Blast hits to 28978 proteins in 2050 species: Archae - 503; Bacteria - 13950; Metazoa - 4366; Fungi - 6940; Plants - 2466; Viruses - 2; Other Eukaryotes - 1342 (source: NCBI BLink).
Link: InterPro Scan - TAIR