K01110

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01110

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01110

Determination of introduced cDNA(s)

  • J033069J06 - Rice Full-length cDNAs - Original: J033069J06

    full reading [+] show sequence

    Nucleotide sequence: J033069J06 - full reading 
    GTCCTTTCGA TCGGCTCTCC CCTCTCTTCT CCTTCCCCCC TTCCCCTCCT 
    GCAAGTAAAA CAAGCGAGAG ACTCCCCCCC TCAATGGCGT CCCGGATCGC 
    GAGGCTGCTA CAGCACCAGA ACCGCCGCCT CCTCTCCACC GCCGCGGAGG 
    CCTCCTCCCG CCGTCCGCCG CGCGCTCCCC TCAGCGGCGC CATCCCCAAG 
    CATGAAGTTG CAAAGGCTGA AGCCTCATCT TTAAAAAAAT CAAGGTGGTA 
    CATGATCAAG TCAAACCCTT CAAGTCCTCT CACAACACAG CGTGAAAGCC 
    ACAAAGTATC TACTCATTTA GTTAGGCCTT CTGCATCCTA CTCCACACAA 
    GCTTCAGAGC AGAACCCAAA AGAGGGTACA AAAGACCTGA AAACTGTTGA 
    AGATCCATTT GATTCCCCTA CCTACAACAT ACCTGAGAAG CCAGTGACAT 
    TTGCTGAAGG GGCTTCCTAC AGTCTTGTAA TAGTTGCGGG ACTTGGAATT 
    GCAGCAGTGG CTGGATATGC TGTTTTCAAA GAACTTATAT TTGAACCAAA 
    AGAGTACAAG ATTTTTGGAA AAGCGCTAGC AAGAGTACAG AATGACAGTC 
    AGGTTACAGC AAAAATTGGG TATCCTGCTA CTGGATATGG CAATGAAAGT 
    AGAAATCGTG CAGCTCGGCA GCGCATTCCT AACAAGGTTT GGACAGATGA 
    GGACGGTGTT GAACATGTGG AGGTAAACTT CTATATCCGA GGACCACATG 
    GAGCTGGAAA GGTGTATTCA GAGATGTTCA AAGATAACAA TGACAGGAGT 
    TGGAAGTTCA CATACCTTAT TGTTGAGATT GTGTCTCCGC ATCGTGTACA 
    ACTAATGTTA GAATCTTACG TACCAGCATA AGGATGCAAG AAACAAGCAG 
    TTAGCAGTGG CAGAATTGTT GTAAGGTTCA TGCCTCCACA CTTACCTATC 
    CAATGTGTAC ATCTCTCATA TTTAGAAATC ATCCTTTGAT T

    Gene models with high sequence identity

    1. AT4G00026.1 [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: ch...
      E-value: 1e-64; Score: 243.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SUBFAMILY NOT NAMED 3.3e-16
    HMMPanther FAMILY NOT NAMED 3.3e-16
    HMMPfam Mitochondrial inner membrane translocase complex, subunit Tim21 3.3e-22

    See the detailed result >

    AT4G00026.1

    Model type
    Protein coding
    Computational Description
    FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim21 (InterPro:IPR013261); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR