K01117

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01117

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01117

Determination of introduced cDNA(s)

  • J023062B01 - Rice Full-length cDNAs - Original: J023062B01

    full reading [+] show sequence

    Nucleotide sequence: J023062B01 - full reading 
    GGCGATTAGC CCCCAAGCAT TTTTGCAAAA CTTGTTTGGA ACTTTGGCCA 
    CCGCCGCCGG CGCCGCGACG CGACGACGGG AAGGCGCCGG CCGCCGGCGG 
    CCAGCGGCGC TGGCGGTGAA GCCGATCGAG GAGGCGTCCT CCACCGCTCG 
    GCGACCAACC GCCGACGGCG ACGGCGATGG CGACAGCGCG CACCATGCAG 
    GGGGCCCCAC TCTGTTTACT CCCCCGCGTC CGCGACCGCG AAGTCTCCGG 
    TCTCCGCCGC GCCCGCGTCG CCTCGCCCTG ACCACCACCA GTCCACCGCC 
    GCGGCCCACA CGGCACAGCC TCTCACAAGG GAGGAAGGGG GAAGTGAGCC 
    CCCGCGCCAC GGCCACGCGC CGCGGGCTTC CTCCTCCTCC TCCTCCTCCT 
    CCTCCCCGAG CCGCACGCCG ATCGATGGCC GCGCGGCGGC GCCTCCTCCT 
    GCTCCTCGTC CTCCTGCTGT GCCGCCTCGC CGCCGTCCTC CCCACCTCCG 
    AAGTGGAGGC CTTGCAGGGT TTCATGGCAG GGTTCGCCGG CGGCAACGCG 
    GCGTTCCAGA GCTGGGACGC GTCCGCGCCC AACCCTTGCA CCTGGTTCCA 
    TGTCACCTGT GGCCCGGGGA ACCAGGTCAT CAGGCTGGAT CTCGGGAACC 
    AGTCGCTGTC CGGCGAGTTG AAGCCCGACA TTTGGCAGCT GCAAGCATTG 
    CAATCCCTGG AACTTTATGG CAATAGCATC AGCGGGAAAA TACCTAGCGA 
    GCTTGGGCGG TTAGCTAGCT TGCAAACTTT GGATCTCTAC TTGAACAATT 
    TCACCGGTGA AATACCGAAT GAACTGGGAA ATTTATCGAA GCTCAGTAAC 
    CTCCGTCTGA ACAACAATAG TCTGTCAGGT GCAATTCCCA TGTCATTGAC 
    AACAATCCAA AATCTTGAAG TGCTGGACTT GTCACATAAC AACTTGTCGG 
    GAATAATACC GACCAATGGT TCATTTTCAC ACTTCACCCC AATCAGTTTC 
    TCCAATAACC CACGTACTTT CGCAAATTCT TCTGATTCGC CATCAAATAA 
    CTCGGGAGCA GCGGTGCCAT CAGGAAGAAG TAGTGCATCC AGCATTGGAA 
    CAATTGCTGG TGGAGCTGCT GCAGGTGCTG CCATGTTGTT TGCTGCTCCT 
    ATTGTATTGT TCGCATGGTG GTGGCGGCGT AAACCACATG ACCAATTCTT 
    TGACCTACTA GAAGAAGAAA CTCCAGAAGT TCATCTGGGT CAGCTTAGAA 
    GGTTCACACT GAGAGAACTG CAGGTGGCAA CAGATAACTT CAGTCAAACT 
    AATTTGCTAG GGAGAGGAGG CTTTGGAAAG GTCTATAAAG GAAGGTTGTT 
    AGATGGTTCA TTGATAGCAA TAAAAAGACT AAATGAAGAT CGAATTGGAA 
    CTGGAGAGCG GCAGTTCCTA ATGGAAGTCG AGATCATCAG CATGGCCGTG 
    CATCAAAATC TCCTACGCCT CCAGGGGTAT TGTATGACAC CCACCGAGCG 
    GCTGCTTGTG TATCCTTACA TGGAGAATAA AAGCCTTGAG ACACGCTTAC 
    GAGAGTGCTC TGATTCACAA CAACCACTTG ACTGGCCAAC ACGAAGAAAA 
    ATCGCGTTAG GGTCTGCAAG AGGGATCTCT TACTTGCATG AAGGATGTGA 
    TCCCAAAATT ATCCATCGAG ATGTCAAAGC TGCTAACATT TTGTTGGATG 
    AAAAACTTGA AGCAGTTGTT GGTGATTTCG GTCTGGCTAG AATTATGGAT 
    TACAAAGTTT CCCATGTTGT AACCGGCGTG ATGGGGACAT TGGGGCACAT 
    TCCCATGGAG TACCTGACTG CAGGAAGAAC TTCAGATAAA ACTGATGTTT 
    TTGGGTATGG AATCATGCTT TTTGAACTGA TTAGTGGGAA AAGGGGATTT 
    GATCTTGTTG GTCTTGCAAA TGAAGAAAAT GCCAGAGTGC ATGATTGGGT 
    GAAGAAACTG CTGGAAGAGG ACAGGCTGGA GGTGCTGATT GACCCAAACT 
    TACTGGAAAT CTACAATGGT GGGGAACAGG GAGTGCGAGA GGAGATGAGG 
    TTGCTGGTGC AGATTGCGCT GCTCTGCACC CAGGAGTCCG CTCCAAGCCG 
    CCCCAGAATG TCAACGGTGG TGACAATGCT AGAAGACGGT ATCGCGGAGC 
    ACTGGGATGC ATGGCAAAGG AAGACGATTG TGCAGGCAAG CCTGCAAGGA 
    GGACAGGGCG TTTCTGAGGC TCGCAATGAC TCTGTTGCAA ATCTCCCTCC 
    AGACACATTG TCTGGTCCAA GGTGACTGCC ACCTTAAGGA CTATGAAGGG 
    TGGTTCTTTT GTAGAGCTTA GTGAACTTAG ACAGAACACT TGCCATTCTT 
    AAAAAAACAG CAGATTATAT GTTTTCTTGT AGCATGTGTA TGTATTTTAG 
    TTTTTCCCCT TTTTTTCAAG TAATTCATAA TCACTACT

    Gene models with high sequence identity

    1. AT1G71830.1 [+] show detail - somatic embryogenesis receptor-like kinase 1
      E-value: 4e-175; Score: 612.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Protein kinase, catalytic domain 33.559
    HMMSmart Serine/threonine-protein kinase domain 3.7e-22
    HMMSmart Tyrosine-protein kinase, catalytic domain 2.2e-22
    HMMPfam Serine/threonine-protein kinase-like domain 8.1e-39
    HMMPfam Leucine-rich repeat 0.21
    HMMPfam Leucine-rich repeat 0.0092
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 0.000000034
    Gene3D no description 1.1e-39
    Gene3D no description 1.1e-21
    Gene3D no description 3.4e-41
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    superfamily Protein kinase-like domain 2.4e-71
    superfamily L domain-like 7.7e-39
    HMMPanther SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1.1e-214
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.1e-214

    See the detailed result >

    AT1G71830.1

    Model type
    Protein coding
    Short Description
    somatic embryogenesis receptor-like kinase 1
    Curator Summary
    Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. later
    Computational Description
    somatic embryogenesis receptor-like kinase 1 (SERK1); FUNCTIONS IN: transmembrane receptor protein serine/threonine kinase activity, kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: plasma membrane, protein complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: somatic embryogenesis receptor-like kinase 2 (TAIR:AT1G34210.1); Has 181670 Blast hits to 121787 proteins in 4268 species: Archae - 123; Bacteria - 18224; Metazoa - 45784; Fungi - 8994; Plants - 88758; Viruses - 411; Other Eukaryotes - 19376 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR