K01128

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01128

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01128

Determination of introduced cDNA(s)

  • J033070E05 - Rice Full-length cDNAs - Original: J033070E05

    full reading [+] show sequence

    Nucleotide sequence: J033070E05 - full reading 
    GCCTGCGCCA TCGCCGACGC GCGCCGCGGC GAACCCACCG GATCATCTTC 
    TCGCGCGCCG CCGAATTCCC TCCCGCCTCC GCCGAATCCA CCGGCGGGCG 
    CCCGATCCCT CATCCTCCTC CTCCTCTGCT CGTGCCGCAG GCGCGGGCGG 
    ACTCCCTCTT TCTCTCTCGA TTGGAAGGAA TAGCTGCTTA CTGTTGAATA 
    TTGACTTGCT TTTGTTGCTG TCACAATGTC GGGCCTGCTG AATTCAAACC 
    TGAACAATTC TGCATCAAAT CTTCAAGACT CAACTGGAAG ACCGTTTACA 
    GGGTCCTTTT CTGGTCAATC TGGATCAGTT CCAGGGGGTT TCCATCACTC 
    TGGTTTGCAC AACATGCATG GAAGTTTAAA TATGCCAAAT ATGCCTGGAT 
    CGTTTTCTCA GAGGAATGCT GCCATGAGTG GCCTTCCATC CTCTGGGGTT 
    CAACAGCCTG GAGGGAGCAT GCCTGGGAGA TTTGCTTCAA ACAACCTTCC 
    AGTTGGCATG TCCCAGATCC CTCATGGTCA TTCAGGAGTC GGTAGTAAAG 
    GATTGAATGT TGGTGGAGGT CCAGCATTTA GTAGTAGCCT GAATATTGGT 
    GGTACCATTC AAGGCTTATC CTCAAACCTG GGTGCTGGTG GTAGTCGTAA 
    TTCTGTTCCT GGGATGTCAG TATCTCCATC TTTGGGAAAT TTGGGTCCTA 
    GGGTCACTGG TTCTGTAGGA AATATTGTGG GTGGAAGTAA CATTGGAAGG 
    AATATAAGCT CTGGTGGATT ATCTGTGCCA AGCATAGCAT CACGCATGAA 
    TTTGAGTGGC AATGTTGGCA GTGGCGGTCT GAATGTCCAA GGATCCAGCA 
    GGATGATGAA TGGCATTCTT CAGCAAGGAT CACCTCAAAT GCTGAACATG 
    ATGGGGAGTT TATATCCAAC ATCTGGAGGT TCTTTATCTC AGAACCAAAT 
    ACAAGGAGGA AATAATTCCC TTGGTTCTAT GGGGATGCTG CATGATGCCA 
    GTGACGGTGC TCCATTTGAC ATGAGTGATT TTCCCCAGCT GACTGGTCGA 
    CCTAGTTCTG CGGGTGGTCC ACAAGGACAA TATGGCTCCC TACGGAAGCA 
    AGGAGTTGGT GTTAACACCA TTGTTCAGCA AAACCAGGAA TTCAGCATTC 
    AAAATGAAGA CTTCCCGGCT TTACCTGGAT ACAAAGGCAA CACTACAGAT 
    TATGCTATGG AGTTGCATCA CAAGGAACAA CTTCATGATA ATGTACCTGT 
    TATGCAAGCG CAACAATATC CGATGTCAAG ATCAGTTGGC TTTAACTTAG 
    GAAGTAACTA CCCACCAAAT CGTCAGCAAC ACAGCAAGGT GCTAATTCAG 
    TTCAGAATGC TGGTCCCCCA AATATCGGAC TAAGACCACT AAATTCTCCA 
    AATCAAACTT CTAGTTTGGG ATCATATGAG CAACTTATCC AGCAATACCA 
    GCAACCTCAG GCTCAAAATC CTTTCAGATT GCAGCAGGTG TCTTCAGCTA 
    CCCAGTCATA TAGGGATCAG AGTCTAAAGT CCATCCAGGG GGGCCAAACA 
    CCATCTGATC CATATGGCTT GATGGGATTG CTAGGAGTTA TCAGGATGAA 
    TGATGTTGAC TTATCATCTC TTGCTTTAGG AATAGATTTG ACAACATTGG 
    GTTTAAACTT GAACTCACCA GACAATCTGT ACAAGACATT TGGCTCTCCA 
    TGGTCAAACG AGCCAGCAAA AGGAGAACCT GAGTTTCATA CTCCAGCTTG 
    CTACTCCGCT GAGCAACCTC CACCACTACA ACCTATACAT TTTCAGAAAT 
    TCCAGACGCC AACACTGTTT TACATCTTCT ATAGCATGCC AAGGGATGAA 
    GCTCAGCTAT GTGCTGCTAG TGAGCTGTAT ACTCGAGGAT GGTTCTACCA 
    TAAAGAAGTG CGTGTGTGGC TCACCAGAAT TCCAAATGTT GAGCCTCTGG 
    TCAAAACACC TCATTATGAA CGAGGATCTT ATGGTTGCTT TGATCCAAAC 
    AACTGGGAGA CAATCCGCAA GGACAACTTT GTTCTCCATT ATGATCAAAT 
    AGAGAAGAAG CCAGCTATCC CTTCATCCCA AAACGTTAGG TGAAACATTT 
    CTTATACCTC CTGGCTCAAG TTTTATCCTT TTTTCTCAAG GGGAGGAAGA 
    AATTTGTGCT TACGCTAAGA GCAGTGTCAT GACCTAACTC TGAGGACAGT 
    GAGAACGCAG GGCCATGCCG ATCTGCAGAG GGGAGGCTGC AAAACAAAAG 
    CGGGAATGCC TGCTTAACCC TTGTAATTAG ATTATAGTGG TGAAGTTTTC 
    CTTTAATCGT TTGTAGATTG CACTCTCAGC AACATCTCCA GGTGACCAAC 
    TTTTAGGAAT AGCAAGTCTT AAACATGCTT TTTTACCGTT AAAGCTTTCG 
    GTGTCGAAAC GTAGTTGGCA AATGCACATA TCGGCGTTGG TGTTTGCCCT 
    TTTACCTTAA AACAAAGTAC AATGTGGGCA TTAGGCGCCA GATTGATTTG 
    CTTAATTTTG GCAGTCTTAA AACCTAGGCA TGCTTAATTT GCTTAATTTT 
    GGTAGTCTTA AAACC

    Gene models with high sequence identity

    1. AT1G07705.2 [+] show detail - NOT2 / NOT3 / NOT5 family
      E-value: 3e-158; Score: 287.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam NOT2/NOT3/NOT5 1.9e-40
    HMMPanther CCR4 NOT-RELATED 5.2e-52

    See the detailed result >

    AT1G07705.2

    Model type
    Protein coding
    Short Description
    NOT2 / NOT3 / NOT5 family
    Computational Description
    NOT2 / NOT3 / NOT5 family; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NOT2/NOT3/NOT5 (InterPro:IPR007282); BEST Arabidopsis thaliana protein match is: VIRE2 interacting protein 2 (TAIR:AT5G59710.1); Has 3259 Blast hits to 2610 proteins in 429 species: Archae - 0; Bacteria - 983; Metazoa - 821; Fungi - 441; Plants - 185; Viruses - 8; Other Eukaryotes - 821 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR