K01132

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01132

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01132

Determination of introduced cDNA(s)

  • J033144F10 - Rice Full-length cDNAs - Original: J033144F10

    full reading [+] show sequence

    Nucleotide sequence: J033144F10 - full reading 
    GAGTCTCAAG TCTCTGTCTC GTCGTCCTCG CATCTCCACT CGCCATGGGC 
    AAGATTAAGA TCGGAATCAA CGGTTTCGGA AGGATCGGGA GGCTCGTGGC 
    CAGGGTGGCC CTCCAGAGCG AGGATGTCGA GCTCGTCGCC GTCAACGACC 
    CCTTCATCAC CACCGACTAC ATGACCTACA TGTTCAAGTA CGATACCGTG 
    CACGGCCAAT GGAAGCACAG CGACATCAAG ATCAAGGACT CCAAGACTCT 
    GCTCTTGGGC GAGAAGCCGG TCACCGTTTT CGGCATCAGG AACCCTGACG 
    AGATTCCGTG GGCTGAGGCT GGTGCTGAGT ATGTCGTGGA GTCCACCGGT 
    GTCTTCACTG ACAAGGAGAA GGCTGCTGCT CACTTGAAGG GTGGTGCCAA 
    GAAGGTTGTC ATCTCTGCCC CGAGCAAAGA TGCTCCGATG TTTGTCTGCG 
    GTGTCAACGA GGACAAGTAC ACTTCAGATA TTGATATTGT CTCAAATGCT 
    AGCTGCACCA CAAACTGCCT TGCTCCTCTT GCCAAGGTCA TTCATGACAA 
    CTTTGGTATT ATCGAGGGTC TGATGACAAC TGTTCATGCC ATCACTGCCA 
    CCCAAAAGAC CGTTGATGGA CCGTCCAGCA AGGACTGGAG GGGTGGCAGG 
    GCGGCCAGTT TTAACATCAT TCCCAGCAGC ACTGGTGCTG CCAAAGCTGT 
    TGGCAAGGTT CTTCCTGATT TGAATGGCAA GCTTACGGGA ATGTCCTTCC 
    GTGTTCCCAC TGTCGATGTC TCAGTTGTTG ATCTCACAGT TAGAATCGAG 
    AAGGCTGCCT CATATGATGC TATCAAGAGT GCTATCAAGT CTGCATCAGA 
    GGGAAAGCTC AAGGGAATCA TAGGATATGT TGAGGAAGAC CTGGTTTCTA 
    CTGACTTTGT TGGTGACAGC AGGTCGAGCA TCTTCGACGC CAAGGCTGGA 
    ATTGCTCTTA ACGATAACTT TGTCAAGCTT GTCGCCTGGT ACGACAACGA 
    GTGGGGTTAC AGCAACCGTG TCATCGACCT GATCCGCCAC ATGGCCAAGA 
    CCCAGTAGAA TCCTTTTGCT TGCCATGGTA TTCCATGGCC GCCGAGCCGG 
    AGATACCGGT ATGCTTTGTC TATGCTGAGA ATAAAACGTG GACGGTGTTC 
    ATCAGGACCC ACCCCCTCTG TTAATGCTAG TTGGGATAAT GAGTTGCATT 
    TTGTTTTCCA ATCTACCTAC TTGTAAGTTG TAACGATGCT GATGATATGG 
    ACCTGAGTCT ACTTTTTTGC TTGTGAAGAA TATAAGCCGT CCAGTGCAGT 
    TGTAATTTTG TTATGCTGGT TGCATATATG GGCTTTGTGT TTGGTTCGTG 
    CTACCT

    Gene models with high sequence identity

    1. AT3G04120.1 [+] show detail - glyceraldehyde-3-phosphate dehydrogenase C subunit 1
      E-value: 4e-160; Score: 561.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Glyceraldehyde 3-phosphate dehydrogenase subfamily 1.1e-267
    HMMPIR Glyceraldehyde 3-phosphate dehydrogenase family 1.5e-174
    Gene3D no description 3.2e-81
    superfamily Glyceraldehyde-3-phosphate dehydrogenase-like 2.3e-84
    superfamily NAD(P)-binding domain 4.1e-69
    HMMPfam Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain 5.4e-73
    HMMPfam Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain 2.8e-55
    HMMSmart Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain 4.4e-87
    HMMTigr Glyceraldehyde-3-phosphate dehydrogenase, type I 1e-193
    FPrintScan Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup 4.6e-48
    FPrintScan Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup 4.6e-48
    FPrintScan Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup 4.6e-48
    FPrintScan Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup 4.6e-48
    FPrintScan Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup 4.6e-48
    PatternScan Glyceraldehyde 3-phosphate dehydrogenase, active site 0

    See the detailed result >

    AT3G04120.1

    Model type
    Protein coding
    Short Description
    glyceraldehyde-3-phosphate dehydrogenase C subunit 1
    Curator Summary
    encodes cytosolic GADPH (C subunit) involved in the glycolytic pathway but also interacts with H2O2 potentially placing it in a signalling cascade induced by ROS.
    Computational Description
    glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (GAPC1); FUNCTIONS IN: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, copper ion binding, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: in 11 processes; LOCATED IN: in 8 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde-3-phosphate dehydrogenase C2 (TAIR:AT1G13440.1); Has 25372 Blast hits to 25360 proteins in 6350 species: Archae - 71; Bacteria - 10995; Metazoa - 2358; Fungi - 2851; Plants - 3864; Viruses - 0; Other Eukaryotes - 5233 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR