K01147

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01147

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
T2  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01147

Determination of introduced cDNA(s)

  • J033094G14 - Rice Full-length cDNAs - Original: J033094G14

    full reading [+] show sequence

    Nucleotide sequence: J033094G14 - full reading
    GACCACCAGC CGCCGCCTCG GCCGCGAGAT CGCCGGCCGC CGCCATGTCG 
    AATCCGGCCG CCTACTACGC CGCCGTCGCG CGGAAGCAGT ACTTCTGCTA
    CCAATGCAAC CGCACCGTCC TCCTCCCGGC CTCCGCCGCC GCCGCCGGGG
    CGCTCTCCTG CCCGGAGTGC CGCGGGGATT TCATCGAGGA GGTCAACGTC
    CCCGCCCCCG CCATCATCCC CTTCCCCTTC GCCTTCCCCC CGATGATGCC
    CACCGCCACC TCCGCCTCCG CCGCCGCCGC CGCCGCGGCC TCGCCGACCC
    AGTCCTCCTC CTCGTCCGCC GCCACGTCGC CATCCAGCGA CCTCTCCGCC
    TTCCTCAACA GCATGCTCGG CCCGCTCAAC CTCCGCACCG ACGAGCGGAT
    GCCGGGAACC ACCTCCGCCG CGGGCACGGC GACCCCCGAG GACGAGCCCG
    ACGGGTTCGA CGCGGTCACG TTCTTCCAGA ACTACCTCCA GAATCTCATG
    GACGGCGGCG CCAACATCCA GGTCCTCCTC GACGACGCCA GCGTCGGCCT
    CGCCCCCGGC ATCGGCCGCG TCGGCGGCGC CAGCTTCGGG GACTACTTCG
    TCGGCCCGGG CCTGGAGCAG CTCATCGAGC AGCTCACCGA GAACGACCCG
    AACCGCTACG GCACGCCGCC GGCGGCCAAG TCGGCTCTCT CCACGCTCCC
    CGATGTCGTC GTGACCGACG CCATGGTCGC CGCGGCGGAT GGCGCCGAGT
    GCGCCGTCTG CAAGGAGGAT TTCTCGCCTG GGGAAGGGGC CAAGCAGATG
    CCCTGCAAGC ACATTTACCA CGCCGACTGC ATCATGCCAT GGCTGGATCT
    CCACAATTCA TGCCCCATAT GCCGCTTTGA GCTGCCTACT GATGACCCTG
    ATTACGAGGG GCGTAAGAAA TCAAACCCAC AGCCAACTGC TGGCGTTGAT
    GCCGGAGCTG CATCTGGGAG TTCTACTGCT GCTGAGGAGC GAGAGGAGAG
    TGGGGAGAGT GCGAGGTTGG TCGAACGGCG GTTTAACGTG TCGCTGCCAT
    GGCCTTTTAG TGGATTGGGA TCGCAAACGC CGCAGCAGGA TGGGAGCAAT
    GGGGGCGCTG GTGCCAGTGG CTCGAAGGAT GGAGGCGCAT CCAGTGACAA
    AAAATAAGCA TAAATGTGCG ATTGATTGGA GGTTTTCCTC TTGGATCTGG
    CGTTCAAAGG TCTACAATAT TTATGTGTCG CTGCCACTTA TATACTATAG
    ACATCAAAAG ACCAAAGAAA TTTACAGTCT TTTTATCCGC TGGAACAATT
    GTTCATTCTT GTTCTCGCTG CCCGTTAGGT CATGTACACA AGGCACGGAA
    ACTGCCGAGG CAGGAAACGT GCGTTGGGAG TTTGAGACTT TTATGTGTAG
    ATTTGTTAAT TAAATTCATC AAAGTACCAA ACTTGGAGC

    Gene models with high sequence identity

    1. AT3G19950.1 [+] show detail - RING/U-box superfamily protein
      E-value: 6e-46; Score: 182.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Zinc finger, C3HC4 RING-type 8.3e-06
    HMMSmart Zinc finger, RING-type 6e-07
    Gene3D no description 4.1e-14
    ProfileScan Zinc finger, RING-type 12.15
    HMMPanther RING ZINC FINGER PROTEIN 2.8e-42
    superfamily RING/U-box 4.7e-16

    See the detailed result >

    AT3G19950.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G55530.1); Has 11106 Blast hits to 11075 proteins in 297 species: Archae - 0; Bacteria - 6; Metazoa - 2940; Fungi - 1152; Plants - 5266; Viruses - 73; Other Eukaryotes - 1669 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR