K01147

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small) present in fewer numbers in organism (PATO:0001997) (Cauline leaf::Number::few) abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) abnormal (PATO:0000460) (Rosette leaf::Others)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
	stem (PO:0009047)	present in fewer numbers in organism (PATO:0001997) (Stem::Number::few)
T2
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) decreased width (PATO:0000599) (Rosette leaf::Shape::narrow) abnormal (PATO:0000460) (Rosette leaf::Others)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
	stem (PO:0009047)	increased thickness (PATO:0000591) (Stem::Shape::thick) decreased thickness (PATO:0000592) (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01147

Determination of introduced cDNA(s)

J033094G14 - Rice Full-length cDNAs - Original: J033094G14

full reading [+] show sequence

GACCACCAGC CGCCGCCTCG GCCGCGAGAT CGCCGGCCGC CGCCATGTCG 
AATCCGGCCG CCTACTACGC CGCCGTCGCG CGGAAGCAGT ACTTCTGCTA 
CCAATGCAAC CGCACCGTCC TCCTCCCGGC CTCCGCCGCC GCCGCCGGGG 
CGCTCTCCTG CCCGGAGTGC CGCGGGGATT TCATCGAGGA GGTCAACGTC 
CCCGCCCCCG CCATCATCCC CTTCCCCTTC GCCTTCCCCC CGATGATGCC 
CACCGCCACC TCCGCCTCCG CCGCCGCCGC CGCCGCGGCC TCGCCGACCC 
AGTCCTCCTC CTCGTCCGCC GCCACGTCGC CATCCAGCGA CCTCTCCGCC 
TTCCTCAACA GCATGCTCGG CCCGCTCAAC CTCCGCACCG ACGAGCGGAT 
GCCGGGAACC ACCTCCGCCG CGGGCACGGC GACCCCCGAG GACGAGCCCG 
ACGGGTTCGA CGCGGTCACG TTCTTCCAGA ACTACCTCCA GAATCTCATG 
GACGGCGGCG CCAACATCCA GGTCCTCCTC GACGACGCCA GCGTCGGCCT 
CGCCCCCGGC ATCGGCCGCG TCGGCGGCGC CAGCTTCGGG GACTACTTCG 
TCGGCCCGGG CCTGGAGCAG CTCATCGAGC AGCTCACCGA GAACGACCCG 
AACCGCTACG GCACGCCGCC GGCGGCCAAG TCGGCTCTCT CCACGCTCCC 
CGATGTCGTC GTGACCGACG CCATGGTCGC CGCGGCGGAT GGCGCCGAGT 
GCGCCGTCTG CAAGGAGGAT TTCTCGCCTG GGGAAGGGGC CAAGCAGATG 
CCCTGCAAGC ACATTTACCA CGCCGACTGC ATCATGCCAT GGCTGGATCT 
CCACAATTCA TGCCCCATAT GCCGCTTTGA GCTGCCTACT GATGACCCTG 
ATTACGAGGG GCGTAAGAAA TCAAACCCAC AGCCAACTGC TGGCGTTGAT 
GCCGGAGCTG CATCTGGGAG TTCTACTGCT GCTGAGGAGC GAGAGGAGAG 
TGGGGAGAGT GCGAGGTTGG TCGAACGGCG GTTTAACGTG TCGCTGCCAT 
GGCCTTTTAG TGGATTGGGA TCGCAAACGC CGCAGCAGGA TGGGAGCAAT 
GGGGGCGCTG GTGCCAGTGG CTCGAAGGAT GGAGGCGCAT CCAGTGACAA 
AAAATAAGCA TAAATGTGCG ATTGATTGGA GGTTTTCCTC TTGGATCTGG 
CGTTCAAAGG TCTACAATAT TTATGTGTCG CTGCCACTTA TATACTATAG 
ACATCAAAAG ACCAAAGAAA TTTACAGTCT TTTTATCCGC TGGAACAATT 
GTTCATTCTT GTTCTCGCTG CCCGTTAGGT CATGTACACA AGGCACGGAA 
ACTGCCGAGG CAGGAAACGT GCGTTGGGAG TTTGAGACTT TTATGTGTAG 
ATTTGTTAAT TAAATTCATC AAAGTACCAA ACTTGGAGC

Gene models with high sequence identity

AT3G19950.1 [+] show detail - RING/U-box superfamily protein
E-value: 6e-46; Score: 182.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Zinc finger, C3HC4 RING-type	0.0000083
HMMSmart	Zinc finger, RING-type	0.0000006
Gene3D	no description	0.000000000000041
ProfileScan	Zinc finger, RING-type	12.15
HMMPanther	RING ZINC FINGER PROTEIN	2.8e-42
superfamily	RING/U-box	4.7e-16

See the detailed result >

AT3G19950.1

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G55530.1); Has 11106 Blast hits to 11075 proteins in 297 species: Archae - 0; Bacteria - 6; Metazoa - 2940; Fungi - 1152; Plants - 5266; Viruses - 73; Other Eukaryotes - 1669 (source: NCBI BLink).
Link: InterPro Scan - TAIR