K01213

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01213

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01213

Determination of introduced cDNA(s)

  • J013024O19 - Rice Full-length cDNAs - Original: J013024O19

    full reading [+] show sequence

    Nucleotide sequence: J013024O19 - full reading
    GGAGGAACAC AAACCAGAGA TCCAAAAGAA TCCGTCGAGG CCACAGATTG 
    TTCCAGAGTT TTTGTTTTCC TCTTCTCCCC TTCGCGTTAG CGAGCATGTG
    TCCCGGAGGC AGATACGCGG GCCTCGACGT CCCCGCCTGC GCGGCGGCGG
    GAGACCTGAG GCCGGCGTTC GACGTGCTGG ACGCGGACCG CGACGGTCGC
    ATCAGCCGGG AGGACCTCAA GTCGTTCTAC GCCAGCGGCG CGGCCACCAG
    CGAGCGGTTC GACGACGAGG ACATCGCCGC CATGATCGCC GCAGCCGACG
    TGGACAACGA CGGGTTCGTG CAGTACGACG AGTTCGAGCG CCTGCTGGGG
    CGCGCCGCCG CGGGGGCGGG GTGCCGGCCC GCGATGGAGG ACGTGCTCCG
    GGTGATGGAC CGCGACGGGG ACGGCAAGGT GGGGTTCGAC GACCTCAAGG
    CGTACCTCGG CTGGGCCGGG ATGCCGGCGG CCGACGAGGA GATCCGCGCC
    ATGATACGCG TGGCCGGCGG CGGCGACGGC GATGGTTGCG TGGGGCTCGA
    GGAGCTCGCC ATCGTCCTCG GCTGCTCGCC CACAAATTGG ACCGCATCTT
    CTCAAACTCT GCATTGATGC ATTGATTGGG AGACTTCAAT TTGTTGGTTG
    GTGGTGTTGT GGTGATGTGA TTGTTGAGCG ATTTTCGAGT TTCGAGAAGC
    GTGAGGGATG TTTAATTGGG CGTAACTGCT CCCGAAAATA GGGGTATTAA
    AAACTCCCCG ATGCAGCTTC TTCCATAGAA AAAAGTTGAA AAGTTTGTAT
    TGAAGCTGAG CATCGATGGT GTGAGTTGGG GGTAGGTTTT ATTTGGAACT
    AATGAGATGT TTCTTTTCTC AATCCTTTTT TAAGCAAGTT TCTTTTTCAA
    TCTGAACCGA AAATTTGTGT AAGATCCTCG AAAAAGAGGA GG

    Gene models with high sequence identity

    1. AT5G49480.1 [+] show detail - Ca2+-binding protein 1
      E-value: 5e-21; Score: 98.60

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan EF-Hand 1, calcium-binding site 0
    ProfileScan EF-HAND 2 10.106
    ProfileScan EF-HAND 2 11.696
    ProfileScan EF-HAND 2 11.194
    ProfileScan EF-HAND 2 6.061
    superfamily EF-hand 4.8e-26
    HMMPanther MYOSIN LIGHT CHAIN\CALMODULIN 9 2.3e-45
    HMMPanther CALMODULIN 2.3e-45
    Gene3D EF-hand-like domain 4.7e-22
    HMMSmart Calcium-binding EF-hand 0.02
    HMMSmart Calcium-binding EF-hand 0.011
    HMMSmart Calcium-binding EF-hand 1.5
    HMMSmart Calcium-binding EF-hand 75

    See the detailed result >

    AT5G49480.1

    Model type
    Protein coding
    Short Description
    Ca2+-binding protein 1
    Curator Summary
    AtCP1 encodes a novel Ca2+-binding protein, which shares sequence similarities with calmodulins. The expression of AtCP1 is induced by NaCl.
    Computational Description
    Ca2+-binding protein 1 (CP1); FUNCTIONS IN: calcium ion binding; INVOLVED IN: hyperosmotic salinity response; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 1 (TAIR:AT5G37780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR