K01310

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01310

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01310

Determination of introduced cDNA(s)

  • J023072A14 - Rice Full-length cDNAs - Original: J023072A14

    full reading [+] show sequence

    Nucleotide sequence: J023072A14 - full reading
    GACCCCACCA CCTCCGGTCC ATCTCGGCCG CCGCCGCTGT CGCTGTCGCG 
    ATCGCGATCC CCGCCTAGAT AGACTTCCCC AAGAACCCGC CGCCGCCGCT
    GCAGGGGTGG CGTGGCATCG CGGGAGACCA GCTCGAGCCT TCAGCCTCTT
    TTGCGCCGCC GCCGCCGCCG CCGGTCGATC CGTGTTCTTG GCTCAGGCGG
    CGTCAATGGC GGCGGCGAAT GGGAGCGCCT GCGGCGGAGG CGGCGTGGAC
    AAGGAGAAGG AGGAGTTCAA GCAGATCTAC GGGGTGCTCA AGGAGGAGCT
    GCTCAGGGAC CCCGCCTTCG AGTTCACCGA CTCGTCGCGG CAGTGGATCG
    ATCGCATGTT GGACTACAAT GTACCTGGAG GGAAGTGCAA TCGTGGTCTC
    TCTGTGGTCG ATAGCTATAA GCTGTTGAAG GGCACCAATG TTCTAAGTCA
    GGAAGACATG TTTCTCGCGA GCACTCTTGG TTGGTGCGTT GAATGGCTTC
    AAGCTTACTT TCTCGTGCTT GATGATATCA TGGATGATTC TCACACTCGA
    CGTGGTCAGC CTTGTTGGTT TCGGGTGCCT CAGGTTGGCT CCATTGCTAT
    CAATGATGGG ATTATCCTTC GCAACCATAT CACGCGAATG CTTCGGCTCC
    ACTTTAGAGG AAAACTTTAC TATGCTGATC TCCTTGATTT ATTCAATGAG
    GTCGAGTTCA AGACAGCTTC AGGTCAATTG CTAGACCTTA TCACTACTCA
    CGAGGGAGAA AAAGATCTAA ACAAATATAA CATAGGAGTT CACCGCCGCA
    TTGTTCAATA TAAGACATCC TACTATTCAT TTTATCTGCC GGTTGCTTGT
    GCACTGTTGC TATCTGGAGA GGACTTGACC AAATATGGTG CTGTAGAAGA
    CATTCTTGTT AAGATGGGAA TATACTTTCA AGTCCAAGAC GATTATCTAG
    ATTGTTATGG TGACCCCAAA TTTATTGGCA AGATCGGGAC TGACATTGAA
    GATTACAAAT GCTCTTGGCT AGTTGTGCAA GCCCTTGAGC GTGCTGATGA
    GAGTCAAAAG AGCGTTCTAT TTGAAAATTA TGGAAAGAAA GATCCAGCCT
    GTGTGGCAAA AGTGAAGAGC CTCTACAGAG AACTAAACCT AGAGGCGGTC
    TTTCTGGACT ATGAGAACGA GAGTTACAAG AAGTTGATTG CGGATATAGA
    AGCCCAGCCA AGCATAGCTG TTCAGAATGT TCTGAAGTCC TTCTTGCACA
    AGATCTACAA GAGACAGAAG TAGGGGGGGT TTCTGTGCAG GAAGCTGTCC
    ATTGTTGCAT GTTTCTTCTC TAGCAACTGA TGTTGTATGT TGCAATTTGC
    TGATCTTGGA TAATAATGTT GCAAGGTGTT ATTTCGGGTG TGATGGACCG
    CTTGGTGTAG ACATTAGACA ATAATACATG AGCTGTTTGT CTTGTTATTA
    GC

    Gene models with high sequence identity

    1. AT5G47770.1 [+] show detail - farnesyl diphosphate synthase 1
      E-value: 1e-141; Score: 499.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Polyprenyl synthetase 2.1e-74
    superfamily Terpenoid synthase 3.2e-96
    HMMPanther FARNESYL-PYROPHOSPHATE SYNTHETASE 2.8e-161
    Gene3D Terpenoid synthase 5.6e-98
    PatternScan Polyprenyl synthetase 0
    PatternScan Polyprenyl synthetase 0

    See the detailed result >

    AT5G47770.1

    Model type
    Protein coding
    Short Description
    farnesyl diphosphate synthase 1
    Curator Summary
    Encodes a protein with farnesyl diphosphate synthase activity.
    Computational Description
    farnesyl diphosphate synthase 1 (FPS1); FUNCTIONS IN: dimethylallyltranstransferase activity, geranyltranstransferase activity; INVOLVED IN: farnesyl diphosphate biosynthetic process, isoprenoid biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: farnesyl diphosphate synthase 2 (TAIR:AT4G17190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR