K01312

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01312

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01312

Determination of introduced cDNA(s)

  • J013126A02 - Rice Full-length cDNAs - Original: J013126A02

    full reading [+] show sequence

    Nucleotide sequence: J013126A02 - full reading 
    GTGGTTGATC TCTGAAGAGT TCAGAATTCA GAGCAGAAGT AGTATGAAGC 
    TTCTTGACAC ATGCATGCCA AAACATGGCT CCGTTTGGAG AAGGCTTAGC 
    AATTAGCATG TTTGAGGATG TGCAAGAGGA GGTTTATCCA GGACAATCTA 
    TAAAGTGCAC ACCATGGAAC CTGACAACTT GAAGCTCACC GAATTTCTTG 
    GTTTCACTCA TCATGCATAA GCCAGCAAAG TAGCCAACAC AATCGAAAAT 
    ACCAAAACCG AGAGTGTCAA TGGTTGTTTT GTCAGAGGAC TTGCATTAGG 
    CAACCATGGA TATGCATCCG GAGGTGGCAT GACACAATTA TCACCATTGA 
    AGTACACGCG GTGTGGGAAG GCCCATCCCT TGTCAAAGGT GAAGTCCTTG 
    GAATCCTTAC GCAGAAGAAG TTCTGACTGT GCATTTCCAA GTGGACCAGC 
    TTGCATGAGC AAATCGTTAT AGAACTTAAC TCCCCAGAAC ATCGCAGTAT 
    CATCTAAAAT AGAAGGAATA AACTTCATCA GAGAAAGAGA GAGAGAGAGA 
    GAGATAAAGG AACGTATTAC AAGTGCACTC CAATTTTCTT AAATGAAGGA 
    GAACAGTTTG TAAATTGACT TACTTATCTT GCTTCCATAT GGAGTAAGTG 
    GCTTGTAGTT GAAGCTAAAC AGCTGGGTGA TATTATTGAA GTTAGGATGT 
    TGAGCGACCA AATTCCACTG TGTGTAATTC AAGCGGTAGT TGAAGTTCGT 
    AATCGTGATC TTCACTCTCC AATATTCCTT ATAGTTGAGT TTCACATGCC 
    AGTGGATTCT GATCGGGCAC ATGTGAGAAG TACATTGGAC AAGAGGCTGA 
    CCGGTCCATT TGCCAGGGCC ATCAATGGCA GATTGTAAAT AAGGTGAATT 
    CTCACTGTGG AAATGCATGG AACTTGTTAG CAATTTTGCA GAAAAGTTGG 
    GCCTCAACAA GAAGCGAAGT AAGAGTTTTG GTTTTATTAA CTCACTTTAC 
    ACAGCTTCCA GGACTTGTCC CATTGTTTTG GCAGCCACAA GAGCATGTTG 
    GGCAGTTCAC AATTGTGTCA TTATAAAATG ATGAGAGAGA TACACAGCAG 
    GAAGGAGTCT TCTGAGCAAG AAATTGGGAG TATGTGCAGG TCACATTCCA 
    TGTCACTGCA AACAGATTTT ATTTTTGTTA AGAAACAAAA AACAAAAATG 
    AACTTTATGG TATAAGATTT TGACAAATTT AACTTCTATA TGGAGCCACT 
    ATGATGCATG TCTGCATTTG ACGAATATTA TTTGCTAGAG AATAATATTA 
    ACTGAATTAG CTGTATTCTA TTAGGCCAAC ATGCCAAGTA ATATAACCTA 
    TTATCAACTA TTATTCACAG TTGGACTCAT CTCACTTTGA GAACAATCTC 
    TTTCCCTTCA ACAGATTACA TCTTCTTACT AACCCTACAC ATAAGGTAAC 
    CTAGTTCAAC CATGCAATTG TTGTTTAGGC TGCAAATGCA TTTCCTCAAA 
    GAATGAAAGC AATTGGTATT AAACATTAAA GAACAACAGA TGAGCTACTT 
    ACTTAGAGCT TGGGTTGCTC TGCGCCCATC CCCGGTGAAA AACTTAGTAG 
    GCCTGACAAT CATAGCACGC CCGCACGTGT ACCCAGGACC TGGGGCCTTA 
    AGAGTGAAGT TCTTAGGCAA CTTAACTGTC TTGTTGGTAG TCCCAGCAAG 
    ACCTACACTG ATCTGGAAGG AAGAAGCAGC ATTTGATGGG TCCTGGTTAA 
    ATGTATTTAT AACTCCAGCT TTGCAGCAAT TAGCGATTTG CATGTTGTAT 
    GGGGTGCCCG GAAGCAGATC AACAACTGTG GGGTCCTTCT TGCAGCAGTG 
    GGGCGTGCCA CCCTTGAACT TTGAGCAATC GCCCTGCTCA GTGGTCTGTG 
    CTCCAACCAT CGACCAAATG ACCTCCTTCT TTGCCCATGT CCACCCCAGC 
    TGCCACCCAG GTGCCTGGAT GTGCCGGAAT TGTTGATAGT TGAACATCGT 
    GACCACAGCC TGCACAAGAA ACATTTTGGG GGGAAATCAT GACACACATA 
    TACAAGATAA TCAGAGTATC CATAATATGC TGACATAAAA CTCGTGTTTA 
    TTATTGTTAA TTGCTGCATA TGTTTCTGAC CAGCTGCTGG TTATGCTATC 
    AACTTTGTAC TTCAAAGACA ACTTGTAGTA GTATCAAATA AAATAAAATT 
    ATGGCCTAAT AATAGTTGGG T

    Gene models with high sequence identity

    1. AT5G60920.1 [+] show detail - COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
      E-value: 1e-93; Score: 103.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycosyl-phosphatidyl inositol-anchored, plant 1.9e-66
    BlastProDom Glycosyl-phosphatidyl inositol-anchored, plant 5e-87

    See the detailed result >

    AT5G60920.1

    Model type
    Protein coding
    Short Description
    COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
    Curator Summary
    Encodes a glycosylphosphatidylinositol-anchored protein localized primarily in the plasma membrane of the longitudinal sides of root cells. Necessary for oriented cell expansion in Arabidopsis. Cob mutants have abnormal roots that expand radially rather than longitudinally under certain growth conditions.
    Computational Description
    COBRA (COB); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress, multidimensional cell growth, cellulose microfibril organization; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918), COBRA-like (InterPro:IPR017391); BEST Arabidopsis thaliana protein match is: COBRA-like protein 1 precursor (TAIR:AT3G02210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR