K01318

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01318

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01318

Determination of introduced cDNA(s)

  • J013091J20 - Rice Full-length cDNAs - Original: J013091J20

    full reading [+] show sequence

    Nucleotide sequence: J013091J20 - full reading 
    GGGGATATTT ATGAGCGCTG GTGGAGTGGC GTGGCGAGGT GAGGAGGTGG 
    CTGATCTCTC TCATCAATCT CCTCCGTCGC GGTCGCAGCT GCGGGAGTGA 
    AGCCGCCCCG CGGAGCTAGC TAAACCCTAG CCACTGCCCG GGCGGAGAGT 
    TGGGGTTTGG GTTGGTGGCG GTGGGCCGGT GGCGGCTCGG TGGCGGAGCT 
    CCGGTGTGGG GTGGTGTGGA ATGGAATGGA AGTTATTCGA TGATTTCCCA 
    GGATTTTGAC TAGGCCACAG ATGGTTACAA GTTGCATTCA TGGTCAAAAT 
    TGTGTCTGAA CATAGAGATT CTTTGGAGTT CATAGACGAA GTGATTTGTT 
    TTGTTCAATA CTTCCACACT TATAATGGGT GCTGTCTGCT CAAGGAAGAG 
    AAGCCAATTA GTGCACGAGG ATGACTCTTT CCAGACATCT TCCAGGTTCT 
    CAAAGACCAG CAGCTTGAAA TGGCTGCTGC TTACACTGCC ACGCAGCAAT 
    TCCGATGTCT CCCGCAAGGG CCAGGGAAAG GGCCCTGGTC GTTGCCCATC 
    TCTAATGGAG CTTTGTGTGG CCAAAGCCTG CGAGGATATT AACAAGTATT 
    CTAGTTTTTC TGTATTGCCG AGGGATCTCA GCCAGCAGAT TTTTAATGAA 
    TTGGTAGCGT CGAACCGTCT CACGGAGACA TTGCTTGAAA CTTTTCGGGA 
    TTGTGCACTA CAGGACATTG ATTTGGGGGA GTATCCTGGA GTGAATGATG 
    CTTGGATGGA AGTAGTGGCT TCTCAAAGGC ATTCATTGTT ATCAGTTGAC 
    ATTTCTTGCT CTGAAATAAC TGATAGTGGG TTATATCTTC TTAGAGATTG 
    TCCAAACATG CAAAGCTTGG CATGTAATTA CTGTGATATG ATCTCAGAGC 
    ATGGCCTAGG AATCTTGTCA GGTCTTTCAA ACCTGACATC TCTCAGTTTC 
    AAGAGCAGCG ATGGTATTAC TGCTGAAGCA ATGGAAGCAT TTGCTAATTT 
    AGTTAATTTG GTAAATCTTG ATCTCGAACG ATGCCTAAAG ATTCATGGTG 
    GCCTTGTTCA CTTAAAAGGC CTCAGGAATC TGGAGTCACT CAATATGAGA 
    TATTGTAACA ACATTGCAGA TTCAGATATC AAATACTTAT CAGATCTCAC 
    AAATTTGAAA GAATTGCAAT TGGCTTGTTG TAGAATCACT GATCTGGGTG 
    TTTCTTATCT TAGAGGCTTG TCCAAGCTAA CACAGTTGAA TTTGGAGGGC 
    TGTCCAGTGA CTGCTGCCTG TTTGGAAGCT ATATCAGGAT TGGCTTCTCT 
    GGTGGTGTTG AATTTGAGTC GGTGTGGCAT ATACGGTGAA GGCTGTGAAA 
    ACTTTCAAGG TCTTAAAAAA TTGAAGGTTT TAAACTTGGG GTTCAATAAT 
    ATCACAGATG ATTGTTTAGC ACATCTGAAA GAGTTGATCA ATTTGGAATC 
    TCTAAACTTG GACTCATGCA AGGTTGGAGA TGAAGGCTTA TTACATCTGA 
    GAGGCCTTAT GCTTTTGAAA AGTTTGGAGC TATCTGACAC CGAAGTTGGA 
    AGCAGTGGAC TCCAGCATCT ATCTGGCCTT CGGAATTTGG AAAGCATCAA 
    TCTCTCGTTT ACGTTAGTTA CTGATACCGG TATGAAGAAG ATATCTGCAC 
    TGAATTCACT GAAGTCAGTT AATCTTGACA ATCGGCAGAT TACTGATGTT 
    GGCTTAGCAG CACTTACAAG TCTCACTGGG TTGACTCATC TGGACCTTTT 
    TGGTGCTAGG ATAACGGACT ATGGCACAAG CTGCTTCAGA TTTTTTAAGA 
    ATCTTGAATC TCTTGAAGTC TGCGGTGGGT TAATTACTGA TGCTGGAGTG 
    AAGAATATCA AGGATCTCAA AGCTCTGAAG CAACTCAATC TTTCTCAGAA 
    CGTTAACCTG ACAGACAAAA CCCTGGAGCT GATTTCTGGC TTAACTGCTT 
    TAGTCTCGCT GAACGTCTCC AACACTCGTG TATCCAATGC CGGCCTCCGC 
    CACCTGAAGG ATCTGCAGAA CCTGCGCTCG CTGTCGCTTG ATTCCTGCAG 
    GGTCACGACA AGTGAGGTGA AGAAGCTGCA GGCGACGGTG CTCCCCAACC 
    TGATAAGCGT TCGACCCGAG TAGCTGGACA CTACATGATC ACCTGTAAAT 
    AATCATCTGG ATGGCTTCAT GTAGATAGCT TTGCAAGGGC CTGGATTGAA 
    GCCAGATTAA TAAGTAAAGT CTATGGTAGC ATTTGTTGGC CTAAAACCGG 
    GAGACGTTGG CCCAACCGGG AGAAAGCCTT TCTACACCCC AAAAGCTAGC 
    TCATGAGGTG AGGGACCCCT CCCCTTTTAA GTTGGTGCCA CTCCCCCTAA 
    ACTTTCAATG TGGGACTATT CTCAACAGCA TTTACTAGGT CCTTCCTGCT 
    CCGTTTATCG GGATCTTTTC GTTTTCAAGT ACTGAAAAAA TTACTTGTAT 
    TTCCTTCACT CCGTGTACCC TCCAAGGCGT GACGGGAAGG AACAAAATTG 
    TAAATATTGC GCTTCCTCGC CG

    Gene models with high sequence identity

    1. AT1G15740.1 [+] show detail - Leucine-rich repeat family protein
      E-value: 0; Score: 667.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 650
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 19
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 4
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 73
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 72
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 110
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 240
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 10
    superfamily RNI-like 1.2e-53
    superfamily RNI-like 1.5e-24
    Gene3D no description 1.5e-36
    Gene3D no description 1.3e-06
    HMMPanther F-BOX/LRR PROTEIN-RELATED 2 3.9e-109
    HMMPanther F-BOX/LEUCINE RICH REPEAT PROTEIN 3.9e-109

    See the detailed result >

    AT1G15740.1

    Model type
    Protein coding
    Short Description
    Leucine-rich repeat family protein
    Computational Description
    Leucine-rich repeat family protein; BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT4G23840.1); Has 38052 Blast hits to 19856 proteins in 856 species: Archae - 6; Bacteria - 8624; Metazoa - 11681; Fungi - 680; Plants - 12072; Viruses - 79; Other Eukaryotes - 4910 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR