K01404

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01404

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K01404

Determination of introduced cDNA(s)

  • J033087L04 - Rice Full-length cDNAs - Original: J033087L04

    full reading [+] show sequence

    Nucleotide sequence: J033087L04 - full reading 
    GGCAGATTTC TGCACATGAG GCATCTCTCT CTCGAAGTAT CGTGTTTTGA 
    TTTGGGCAGG TATGAGCAAA GGTCCCTCAT TTCTTCCTCT TTTCTAAATC 
    CTTGAGGAGA GCAGTGTGAT TTAAGGTTTC AGATGCCTTG AATCCGCTGT 
    GATTTGTCTG AATTTTTGTT AGTTAATTGA TGCCCAATTT GTTGGCTGAG 
    ATTGCCCCTG GACACCAACT AGGGAGCTAT TGCTTTAATT GATGCCCATT 
    TGCTGGCTGA GGTTGCCTCT GAACACCAGC TGTTGCTTTA GTTTGTTAGG 
    GGAAATGTTG CTTTAGTGTC TGAAATGTTT AGTCTTGGCC TCTTGGGGTA 
    AATTAATATT TCAGCTTAAA ATTAAGATTT CAGCTATTGC AATTTGCAAG 
    GAGATATATT CTTTGATAAA TATATATCTT GGCATTTCTG CTAGATAATG 
    CTGACGCGTG CCTCTTCTAA GAAACTTGCA GTGTTCTGCA AACTGAGAGT 
    CTGAGATAAG CTGATAACTC ATCTAGTAAT TGTTGTTCTG AAGCAAAGGG 
    AAATACTTTC TTTACTGTTC ATAAGCTCTC AGTAACTTAA TCTGAGGAAG 
    CAGGTTTAAC CAACCACTGA CATCTTATTA ATTGCTAGTG CTAGAGATTT 
    GCAAAGTTTC AGATAACAAA AGTGAGCAAT TGATACTACC CTCCTCCACT 
    AAAGCTACTT TTTATACCAG TTTATTCTGT ATCTAAAATA TCTGAACTTC 
    AGTTGACTGG ATTCGATTTA GTAACGAGCT CAGGTAGCTT TCTGAACCAA 
    CCTAACTCCT GTATTTCTAC TCTGAATTTC TGATGGATTA CAACTATTCC 
    TAATTATTCA TTGGTCGTAG TAGTCAGATG GATTACAACT ATTCCTAATT 
    ATTCATTGGT CGTAGTAGTC TTTCGTCAGA AGATATATAT CTGTACATAA 
    CCCAATATCT TCCTCATCAG AGACAGTCGT TGCAAACTTT GCAGGTAGCC 
    AGCCACTGTG AGAGTGTGAG CTGAGGTGAG CATCGCCATG GGAGAGGTTG 
    CAGAAGACAT CTACACCCAA GATGGCACCG TGGACGTCAA GGGCAACCCG 
    GCCACCAAGA AGAACACCGG CAACTGGCGT GCCTGCCCCT ACATCCTCGG 
    TAAGTAACAA CATCTTCCTC GTCGATTGCC AAGCTTGTTC GTCTCCATTG 
    ATGGTGAGAT ATAAGCGAGT GAAGTGACTG ATGTTTGCAA TGGTTTGATC 
    AGCTAACGAG TGCTGCGAGA GGCTGGCCTA CTATGGCATG AGCACCAACC 
    TCGTGAACTA CATGAAGACG CGGCTCGGGC AGGAGAGCGC CATTGCCGCC 
    AACAATGTCA CCAACTGGTC GGGGACTTGC TACATCACCC CCCTTCTCGG 
    TGCCTTCTTG GCTGATGCCT ACATGGGCAG GTTCTGGACC ATTGCCAGCT 
    TCATGATCAT CTACATCCTG GTAACTAATC GTCTTGGATT TCAGTTTCTG 
    ATTGCTATGA TCGATGGTGT GATCGAAGAG AGAGATGTTT TGATGGTTGC 
    AGGGTTTGGC GTTGCTGACA ATGGCGTCGT CGGTGAAGGG GCTGGTGCCG 
    GCGTGCGACG GAGGAGCGTG TCACCCGACG GAGGCGCAGA CGGGGGTGGT 
    GTTCTTGGCG CTGTACCTGA TAGCGCTGGG CACCGGCGGG ATCAAGCCGT 
    GCGTGTCGTC GTTTGGCGCG GACCAGTTCG ACGAGAACGA CGAGGGGGAG 
    AAGCGGAGCA AGAGCAGCTT CTTCAACTGG TTCTACTTCT CCATCAACAT 
    CGGCGCGCTG GTGGCGTCGT CGGTGCTGGT GTACGTGCAG ACGCACGTCG 
    GGTGGGGGTG GGGGTTCGGC ATCCCGGCCG TCGTCATGGC CGTCGCCGTC 
    GCCAGCTTCT TCGTCGGCAC GCCGCTGTAC AGGCACCAGC GGCCCGGGGG 
    CAGCCCGCTG ACGAGGATCG CGCAGGTGCT CGTCGCGTCG GCGAGGAAGT 
    GGGGCGTCGA GGTCCCCGCC GACGGGTCGC GGCTGCACGA GACGCTCGAC 
    AGGGAGTCCG GCATCGAGGG CAGCCGCAAG CTGGAGCACA CCGGGCAGTT 
    CGCGTGCCTC GACAGGGCGG CGGTGGAGAC GCCGGAGGAC AGGTCGGCGG 
    CGAACGCGTC GGCGTGGCGG CTGTGCACGG TGACGCAGGT GGAGGAGCTG 
    AAGAGCGTGG TGCGGCTGCT GCCGATCTGG GCGAGCGGGA TCGTGTTCGC 
    GACGGTGTAC GGGCAGATGA GCACCATGTT CGTCCTCCAG GGGAACACGC 
    TCGACGCCAG CATGGGGCCG CACTTCTCCA TCCCGGCGGC GTCGCTCTCC 
    ATCTTCGACA CCCTCAGCGT CATCGTCTGG GTGCCGGTGT ACGACCGCCT 
    CATCGTGCCG GCGGTGCGCG CCGTGACGGG GCGCCCACGC GGGTTCACCC 
    AGCTGCAGCG GATGGGCATC GGCCTCGTCA TCTCCGTCTT CTCCATGCTC 
    GCCGCCGGCG TGCTCGACGT CGTCAGGCTG CGCGCCATCG CTCGCCACGG 
    GCTCTACGGC GACAAGGACG TCGTGCCCAT CTCCATCTTC TGGCAGGTGC 
    CGCAGTACTT CATCATCGGC GCCGCCGAGG TGTTCACGTT CGTCGGGCAG 
    CTGGAGTTCT TCTACGACCA GGCTCCCGAC GCCATGCGCA GCATGTGCTC 
    GGCGCTGTCG CTCACCACCG TCGCGCTAGG CAACTACCTC AGCACGCTGC 
    TCGTGACCAT CGTTACCCAT GTCACCACCC GGAACGGCGC CGTCGGGTGG 
    ATCCCGGACA ACCTCAACCG CGGCCACCTC GACTACTTCT TCTGGCTGCT 
    CGCCGTGCTC AGCCTCATCA ACTTCGGCGT CTACCTCGTC ATCGCCAGCT 
    GGTACACCTA CAAGAAGACG GCGGATTCAC CGGACGACAA GGCCGAGCAC 
    GCCGGAGCAA ACTGAGCCAC GAGGTGAAGC TGATTATGAC ATACAAGGGG 
    GAATTGAACT GAATTGTGGC GTGTGAATGT CAGAATGTGT GGGGTTCTAA 
    ACAAGTTCTT GGGAGATAAA ATGGAAAGGA AATTAGTGTC

    Gene models with high sequence identity

    1. AT3G54140.1 [+] show detail - peptide transporter 1
      E-value: 0; Score: 56.60

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Oligopeptide transporter 1.3e-102
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 1.8e-255
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 1.8e-255
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 3.1e-37
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 3.1e-37
    PatternScan PTR2 family proton/oligopeptide symporter, conserved site 0
    superfamily Major facilitator superfamily, general substrate transporter 9.5e-22

    See the detailed result >

    AT3G54140.1

    Model type
    Protein coding
    Short Description
    peptide transporter 1
    Curator Summary
    Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. GFP-tagged PTR1 localizes to the plasma membrane and has 8 to 11 predicted transmembrane domains. PTR1 is expressed in a number of different vascular tissues throughout the plant based on promoter:GUS expression analysis. ptr1 mutants have a lower dry weight than wild type plants when both are grown with Pro-Ala or Ala-Ala dipeptides as their nitrogen source, suggesting that PTR1 plays a role in dipeptide uptake in the roots. Furthermore N content of ptr1 mutants is lower than that of wild type plants when grown with Pro-Ala or a mixture of dipeptides as nitrogen source
    Computational Description
    peptide transporter 1 (PTR1); FUNCTIONS IN: dipeptide transporter activity, tripeptide transporter activity, transporter activity; INVOLVED IN: dipeptide transport, oligopeptide transport, nitrogen compound metabolic process, tripeptide transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 40 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: peptide transporter 5 (TAIR:AT5G01180.1); Has 8339 Blast hits to 7886 proteins in 1502 species: Archae - 0; Bacteria - 4164; Metazoa - 798; Fungi - 498; Plants - 2234; Viruses - 0; Other Eukaryotes - 645 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR