K01411

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01411

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01411

Determination of introduced cDNA(s)

  • J033124L02 - Rice Full-length cDNAs - Original: J033124L02

    full reading [+] show sequence

    Nucleotide sequence: J033124L02 - full reading
    GGGCGCAAAC AGTACACGCT CTCCTCCTCC TCCTCGCTGT CTCCCACTCC 
    CATCCCAATG GCGGCGGCGG CGGAGGACGT GGAGTTCGTC GACTACGACC
    GCGACGAGGA GGAGGAGGAG GACGCCATGG ACGAGGTCGA TCGGGGCGGT
    GGCCGCGGCG GGCGCGCGCT ACCCGTACCC CACATCGTCT CCCAGGGCGT
    GATGCGCTCG CGCGGCCGCC TCCTCGGCCG CAGCACCTCC GTGCTCGCCT
    CCAACCGCGA CCGCTTCGAC TCCCTCGCCG ATGCCGGCAA CCCCGGCCAC
    GGCCCACAGC GCTCTATTGA AGGATGGATA CTACTGGTCT CTGGAGTCAA
    AGAAGACGCG GAAGAAGATG ATCTGTACAA CACTTTCAGT GATTTTGGTC
    ATGTTAAGGA CCTACATTTA AATCTGGAAC GCCGCACTGG ATATGCCAAG
    GGATATGCAT TAGTTGAATA TGAAAGTTTT GAGGAAGCAC AAACTGCAAT
    CAAAGCAATG AATGGGACTC AGCTGTTAAC AAGGACTGTC TATGTTGACT
    GGGCATTCAG CAGAGGTCCT ATACAGAAAC TCACCAGTAC AAGGCCATTA
    CATCGGCGAT CTCGGACTCC ACCTCGCAGG CTTGCTGCCT TGACATGTTG
    ACTGGGAGCT ACTATGTCCG CAATCCTGAA TGTTCTCGGT CTGTGTTTTT
    TGATAGATGG TACGAACGTA GTCTTAACCG ATGTATGGTG TGATATATCT
    TCCAGATCCA GCCCCCCTGA GTCTTGATTC TGCTATCCTT ATATATCTGC
    ACTAAGTTTG ATCAACTTTG TTTGTTGAAC TATGTTCTCG GTTGCTGGCC
    TGTGGTAGAG GCTGTTGTAC TGACTGAGTA CGCTAGCTAG AAGGTATATT
    GTGTAGTGAT GACGTTGAGA TGGAAGTGTC TGCCGACTTA AAAGCCTACT
    ACTACATTTT AAGGAAAACA ACTTTCGT

    Gene models with high sequence identity

    1. AT1G51510.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 1e-35; Score: 147.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan RNA recognition motif, RNP-1 16.364
    Gene3D Nucleotide-binding, alpha-beta plait 7.9e-26
    FPrintScan RNA binding motif protein 8 0.00000000000016
    FPrintScan RNA binding motif protein 8 0.00000000000016
    FPrintScan RNA binding motif protein 8 0.00000000000016
    FPrintScan RNA binding motif protein 8 0.00000000000016
    HMMPanther SPLICEOSOME ASSOCIATED PROTEIN 0.000000000000007
    HMMPanther RNA-BINDING PROTEIN 0.000000000000007
    HMMPfam RNA recognition motif, RNP-1 1.5e-16
    superfamily RNA-binding domain, RBD 7.8e-24
    HMMSmart RNA recognition motif, RNP-1 3e-19

    See the detailed result >

    AT1G51510.1

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Curator Summary
    This gene is predicted to encode a protein involved in the exon junction complex. Though there is a predicted RNA binding motif, in the Drosophila ortholog (33% identity), this motif mediates interactions with Mago and is not available for RNA binding. The Arabidopsis Y14 protein appears to be predominantly nucleolar, but there is also some evidence for its presence in the cytoplasm.
    Computational Description
    Y14; FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: nucleoplasm, exon-exon junction complex, nuclear body, nucleolus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA-binding motif protein 8 (InterPro:IPR008111); BEST Arabidopsis thaliana protein match is: ortholog of human splicing factor SC35 (TAIR:AT5G64200.2); Has 11259 Blast hits to 10017 proteins in 625 species: Archae - 2; Bacteria - 976; Metazoa - 6273; Fungi - 1165; Plants - 1793; Viruses - 0; Other Eukaryotes - 1050 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR