K01425

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01425

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01425

Determination of introduced cDNA(s)

  • J023002L13 - Rice Full-length cDNAs - Original: J023002L13

    full reading [+] show sequence

    Nucleotide sequence: J023002L13 - full reading 
    GATCCAGAAT CAGATCCACA AGGCAGCAGC TGCAGCAGCA TCGACCATGG 
    CGATGGCGCG ATCCATCCTC CTCCTCCTCC TCCTCGCCGC CGCCGCCTCC 
    GCCTCCGCCG ACGCGCCCTT CCTCGTCGCG CACAAGAAGG TTTCGCTCTC 
    CCGCCCCAAG CCTGGCGTCG AGCGCCTCGC CGTCTCCCTC GACCTCTACA 
    ACCAGGGATC CGCAACTGCC TATGATGTGA GCATTAATGA TGATACTTGG 
    CCAAAGGAGG CATTTGAGCT TGTCTCTGGA GAGATGTCAA AGACATTGGA 
    AAGGCTTGAC CCTGGTGTCA CTGCTTCGCA TGCATTTGTC TTGGAGACCA 
    AAGTACAGGG CAGGTTTCAA GGTTCACCTG CGGTTATTAC CTATCGTGTT 
    CCCACAAAGG CTGCGCTTCA GGAGGCCTAT TCAACCCCCA TCCTTGCACT 
    TGATGTTCTT GCTGAGAGGC CTCCAGAAAA GAAGTTTGAA TGGGCTAAGA 
    GGCTTGTGGC GAAGTACGGG TCGCTGGTGT CCGTTGTTGG CTTGGTTGGA 
    GTGTTTATCT ACCTGGTTGC AAGCCCGTCA AAATCCAGCG GTGCAAAAGC 
    AAGCAAGAAG AGGCGTTGAT ATACTTGCCT ACCATATATA AGGCAGTGTT 
    TGTTCTTTTT TATTAAAAAG AGGAAGAGAT GGTGGCAGGT TTTTTAGATT 
    GATAGCGCGA GAGCTTTAAG GCTGCCGCAT CCTTGAACTG TATGAATTTT 
    CTCTGTTTGT GTTTTTGGAA GTTGAAAACC TAACCCAGAG AATTGGAGAG 
    TAGATTTTGT AACAGATGAA ATCTCAATGC ATCATTTTGA AGTTGCCTGA 
    TACAGATACC TATTCATTGC ATTTGGC

    Gene models with high sequence identity

    1. AT5G14030.4 [+] show detail - translocon-associated protein beta (TRAPB) family protein
      E-value: 5e-42; Score: 168.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Translocon-associated beta 3.9e-42
    HMMPfam Translocon-associated beta 1.9e-55
    HMMPIR Translocon-associated beta 2.2e-91

    See the detailed result >

    AT5G14030.4

    Model type
    Protein coding
    Short Description
    translocon-associated protein beta (TRAPB) family protein
    Computational Description
    translocon-associated protein beta (TRAPB) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated beta (InterPro:IPR008856); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR