K01451

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01451

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01451

Determination of introduced cDNA(s)

  • J033004D14 - Rice Full-length cDNAs - Original: J033004D14

    full reading [+] show sequence

    Nucleotide sequence: J033004D14 - full reading
    GAGGGGGCTC GTCGACGGCG ATCAACCGCC GTCGCCGCGC CTTGGATCTT 
    AGGCCCTTGG TCGGGGATAG AGGCGAGGAT CGAGTCGTCT TCTTCCTCTC
    TCTCTCTCTC TCAGCCAGCC CGCGCGATCA GAGATACACA TTGATCATCG
    ATTCGTTCTC TTCCTCTCCT CTCAGCCGGT CTGTGAATTT CTTGGCCAGG
    TGAGAGGTGA TCCAAGGTTT CTTTCCTCCT TTGACGCTCG CAAGGTGTTC
    GACGGAATGT CTCCGGAGAG CAAGAAGGCG TTGGTGGAGG GGGGCGGCGA
    CGACCGCATC AGCTTCCTCC CGACCGCGCT CCTGCAGCAC GTGCTGTCGT
    TCCTGCAGGC GAAGGAGGTC GTGCGCACCT GCGTGCTCGC CCGGCGCTGG
    CGCCACCTCT GGAAGTCCAT GCCCATCCTG CGCGTCACCG GCGCCGGCGA
    CGCCCGGGCG TTCCACACGT TCACGTACCA TCTTCTTCTC CTCCGAGACC
    GGTCGCCCCT GGAATCTTGC ACGTTCGACT TCAATGTATT CTCCAAAGAC
    GACATGCCCA TCGTGAACCT CTGGATTCGG TATGTCTTGC TGTGCCAAGT
    TCGGGTGCTC ACTCTCGCCA TCGGTGGACA TCAGCTGACT GATCTGCCTG
    TAGTCTCCCC AATCTTGACA AGGTTGGAGC TTAGTCGTCT GAGTGTAAAT
    GGCAAGTTTC TTGATTTCTC GAGCTGTCCG GCACTGAAAG AGCTGAAGAT
    GACCAACTGC GAGATATCTG CTGACAAAAT ATCTTCCAAG TCCCTCAAGC
    GTCTCAGGAT CTGTGAATGC AAGTTTAAGT CGAAGATGAG AACAAGAATC
    TCTGTACCAA GTCTACTTTT CTTGAAACTA ATAGCTGTCA AGGGTAGAAC
    TCCTTTCCTT GAAGACATGC CAGTGTTGGT AGCAGCAAAA GTTTTACTGC
    TCGACTTCTA CTGTAAGGAT TGTTGTGATG GCAATGATCC TGGGTATTGT
    CCTGCTGGCT GTACGCATTG TTATGGCATT GATGATGGTA GTGCAGGCTG
    TGTGCTTCTA AAAGGTTTGG CGGATGCTAC GAATTTGGAG TTGATAGCTG
    ATCCTGAAGT GTTTATTCTC AAAAGGGATT TGAGGTGGTG CCCTACATTC
    ACTAACTTGA AGACTTTATT ACTCAGCCAG TGGTTTGAGT CTTCTGACCA
    CTGTGCACTA ATTTGCATTC TTCAACACTC ACCGGTTCTA GAGAAGCTCA
    CTCTTCAGCT TTCTAAGAAA TCAGTAATCA ATGTTCGATC AAGAGCGATC
    TACAATTCGA TGGAAAAGTC ATTTACATCA GAAAACCTTA AGACAGTTGA
    AGTTAAATGT CAAGATATTG ACCAGAGAGT TCACAAACTT ATGAAGTCCT
    TGAACAGCTA TGGAATACCA CTTGAGAGAA TTAATATCCA ACAAACAAAT
    CAATTTTCTG AGTGTTTTAA TTTCGTTTGG ACAGGATTCA TACCAAGACA
    GAGTTGCGGA AGACCCGGGC TGTCGATGTA TCTAAATTCT CCTTAATTTG
    CCATCTGGTA TTGCTGCTTC AAACCAATGG GGATATTCTT AAATCGGTTC
    CAACTGAGGG AATGAAACAT AGGTTTATTG ATACGATTTG CTTGGATGTG
    TCTGGACGTG GTTTTATTAG CTACCTACTA GGTATTAGTC TTACTCCATG
    TTTCGTTAAC GGCCTGACTT GGTAGTATCT TTCGTGATGA CTGAAGCTGG
    ATCAGCTACT GAACTGGAAC TGAATGTTCA TGCGATTTAT AAACTTGCGA
    TGCCCTAGGA CAGTTTTATG CTTTCCTTTG TGTATTTTGT GGAGATTTGA
    TCAAATTTCA GTTCATTTTG GACCGACGCA CAAGCTGGAT TACTATTGCG
    GAATTTGGAA AAAAAAAAAG AACTACTTTG TAAAGCAGGT ATGATACCAA
    GCAAGAATCA GGCAGGTATC GGATT

    Gene models with high sequence identity

    1. AT3G26922.1 [+] show detail - F-box/RNI-like superfamily protein
      E-value: 0.000000000009; Score: 69.30

     

    InterPro Scan Digest

    Program Description E-value
    superfamily F-box domain, Skp2-like 0.00000000029
    superfamily RNI-like 0.000000005
    ProfileScan F-box domain, cyclin-like 9.127
    HMMPfam F-box domain, cyclin-like 0.00005
    Gene3D no description 0.00001

    See the detailed result >

    AT3G26922.1

    Model type
    Protein coding
    Short Description
    F-box/RNI-like superfamily protein
    Computational Description
    F-box/RNI-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT3G52680.2); Has 2288 Blast hits to 2252 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 2284; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR