K01501

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01501

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01501

Determination of introduced cDNA(s)

  • J013107D15 - Rice Full-length cDNAs - Original: J013107D15

    full reading [+] show sequence

    Nucleotide sequence: J013107D15 - full reading 
    GGGCCGGCCA AGCAGCTCAG CCTATAACAT AGTAACTGAA TTGCAGCCAA 
    TCCACGTACT ACCGACCGGT TACCGATGGA GCTGATGCTG CCGCCATGGG 
    CGTCCTTCGT CGGCGTAGTG CTCGCCACCG TGCTGTTCCT GAAAGCGGTG 
    CTCGGCCGTA GCCGCCGCGT GTACAACCTC CCGCCGGGGC CGAAGCCGTG 
    GCCGGTCATC GGCAACCTCA ACCTGGTGGG CACGCTCCCG CACCGCTCCA 
    TCCACAACCT CTCCAAGAAG TACGGTCCCC TGATGTACCT CAGGTTCGGG 
    TCGTTCCCCG TCGCCGTCGG CTCGTCGGTG GAGATGGCCA AGTTCTTCCT 
    CAAGACCCAC GACGTGGTGT TCACCGACCG GCCCAAGACC GCCGCCGGCA 
    AGCACACCAC CTACAACTAC AGCGACATCA CGTGGTCGCC CTACGGCGCG 
    TACTGGCGCC AGGCGCGCAA GATGTGCCTC ACCGAGCTCT TCAGCGCCAA 
    GCGGCTGGAG TCGTACGAGT ACATCCGTGG CGAGGAGGTG CGCGCGCTGC 
    TGCGCGACCT GCACGGCGCG GCCGGCGGCG TCGTGGTGCT CAAGGACTAC 
    CTGTCGACGG TGAGCCTGAA CGTGATCACG CGCATGGTGC TGGGCAAGAA 
    GTACCTGGAC AAGGATGCGG GGGGGTCGGT GACGACGCCG GAGGAGTTCA 
    AGTGGATGCT CGACGAGCTG TTCCTGTTCA ACGGCGTGCT CAACATCGGC 
    GACTCCATCC CGTGGCTCGA CTGGCTGGAC CTGCAGGGGT ACATCAAGAG 
    GATGAAGAAG CTCGGCAAGA TGTTCGACCG GTTCCTGGAA CACGTCGTGG 
    ACGAGCACAA CGAGCGCCGC CGCCGCGAGG GGGAGAGCTT CGTGGCCAAG 
    GACATGGTGG ACGTGCTGCT GCAGTTCGCT GACAATCCCA ACCTTGAGGT 
    CAAGCTCAAG AGGGAAGGTG TCAAGGCATT CACTCAGGAC CTCATCGCTG 
    GCGGCACAGA GAGCTCGGCG GTGACCGTGG AGTGGGCGCT GTCGGAGCTC 
    CTGAAGAAGC CGGAGGTGTT CGCCAAGGCC ACCGAGGAGC TGGACCGCGT 
    CGTGGGCCGC GGCCGCTGGG TCACGGAGAA GGACGTCCCG AGCCTCACCT 
    ACGTGGACGC CATCGTGAAG GAGACCATGC GGCTGCACCC GGTGGCGCCC 
    ATGCTGGTGC CCCGCCTGTC CCGCGAGGAC ACGTCCGTCG ACGGCTACGA 
    CATCCCCGCC GGCACGCGGG TGCTCGTCAG CGTGTGGACC ATCGGCCGCG 
    ACCCCAAGCT GTGGGACGCG CCGGAGGAGT TCATGCCGGA GAGGTTCATC 
    GGCAACAAGA TCGACGTGAA GGGGCAGGAC TTCGAGCTGC TGCCGTTCGG 
    GTCGGGCCGG CGGATGTGCC CCGGCTACAG CCTTGGGCTG AAGGTGATCC 
    AGCTGAGCCT CGCCAATCTG CTGCACGGCT TCGCGTGGAG GCTGCCCGAC 
    GGCGTGACGA GGGAGCAGCT GAGCATGGAG GAGATCTTCG GCTTGTCGAC 
    GCCGCGCAAG TTCCCGCTTG AGGCTGTCGT CGAGCCCAAG CTGCCCGCTC 
    ACCTCTATGC TGCTGCCTGA TGTGATATGC CTTTGATGAT GTGCGTGTGT 
    ACGTTCTGTG TCTCTTGACT GTACTGTAGG CACTGCTCCT GTCGCGGTCC 
    AACATTAAGC TTGCAGTGTA TTGCTAGCGT TGTTACTTAT TATGCATCCT 
    GTGCTGCCTT TGTAGAGCTG AATGTAATAG GGCAAGTGTG AGTCAATAAT 
    ATGCTTGATA ATAAGGTGTT ATGCG

    Gene models with high sequence identity

    1. AT5G07990.1 [+] show detail - Cytochrome P450 superfamily protein
      E-value: 7e-115; Score: 411.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Cytochrome P450, conserved site 0
    PatternScan Pyrokinin, conserved site 0
    HMMPanther FLAVONOID 3-HYDROXYLASE 3.3e-214
    HMMPanther Cytochrome P450 3.3e-214
    FPrintScan Cytochrome P450, E-class, group I 7.9e-46
    FPrintScan Cytochrome P450, E-class, group I 7.9e-46
    FPrintScan Cytochrome P450, E-class, group I 7.9e-46
    FPrintScan Cytochrome P450, E-class, group I 7.9e-46
    FPrintScan Cytochrome P450, E-class, group I 7.9e-46
    FPrintScan Cytochrome P450, E-class, group I 7.9e-46
    FPrintScan Cytochrome P450, E-class, group I 7.9e-46
    FPrintScan Cytochrome P450, E-class, group I 7.9e-46
    FPrintScan Cytochrome P450, C-terminal 3.4e-10
    FPrintScan Cytochrome P450, C-terminal 3.4e-10
    FPrintScan Cytochrome P450, C-terminal 3.4e-10
    Gene3D Cytochrome P450 4.6e-127
    HMMPfam Cytochrome P450 3e-96
    superfamily Cytochrome P450 1.6e-130

    See the detailed result >

    AT5G07990.1

    Model type
    Protein coding
    Short Description
    Cytochrome P450 superfamily protein
    Curator Summary
    Required for flavonoid 3' hydroxylase activity.
    Computational Description
    TRANSPARENT TESTA 7 (TT7); CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 706, subfamily A, polypeptide 6 (TAIR:AT4G12320.1); Has 35179 Blast hits to 34934 proteins in 1774 species: Archae - 51; Bacteria - 4733; Metazoa - 12156; Fungi - 7299; Plants - 9637; Viruses - 3; Other Eukaryotes - 1300 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR