K01501

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01501

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01501

Determination of introduced cDNA(s)

  • J013107D15 - Rice Full-length cDNAs - Original: J013107D15

    full reading [+] show sequence

    Nucleotide sequence: J013107D15 - full reading
    GGGCCGGCCA AGCAGCTCAG CCTATAACAT AGTAACTGAA TTGCAGCCAA 
    TCCACGTACT ACCGACCGGT TACCGATGGA GCTGATGCTG CCGCCATGGG
    CGTCCTTCGT CGGCGTAGTG CTCGCCACCG TGCTGTTCCT GAAAGCGGTG
    CTCGGCCGTA GCCGCCGCGT GTACAACCTC CCGCCGGGGC CGAAGCCGTG
    GCCGGTCATC GGCAACCTCA ACCTGGTGGG CACGCTCCCG CACCGCTCCA
    TCCACAACCT CTCCAAGAAG TACGGTCCCC TGATGTACCT CAGGTTCGGG
    TCGTTCCCCG TCGCCGTCGG CTCGTCGGTG GAGATGGCCA AGTTCTTCCT
    CAAGACCCAC GACGTGGTGT TCACCGACCG GCCCAAGACC GCCGCCGGCA
    AGCACACCAC CTACAACTAC AGCGACATCA CGTGGTCGCC CTACGGCGCG
    TACTGGCGCC AGGCGCGCAA GATGTGCCTC ACCGAGCTCT TCAGCGCCAA
    GCGGCTGGAG TCGTACGAGT ACATCCGTGG CGAGGAGGTG CGCGCGCTGC
    TGCGCGACCT GCACGGCGCG GCCGGCGGCG TCGTGGTGCT CAAGGACTAC
    CTGTCGACGG TGAGCCTGAA CGTGATCACG CGCATGGTGC TGGGCAAGAA
    GTACCTGGAC AAGGATGCGG GGGGGTCGGT GACGACGCCG GAGGAGTTCA
    AGTGGATGCT CGACGAGCTG TTCCTGTTCA ACGGCGTGCT CAACATCGGC
    GACTCCATCC CGTGGCTCGA CTGGCTGGAC CTGCAGGGGT ACATCAAGAG
    GATGAAGAAG CTCGGCAAGA TGTTCGACCG GTTCCTGGAA CACGTCGTGG
    ACGAGCACAA CGAGCGCCGC CGCCGCGAGG GGGAGAGCTT CGTGGCCAAG
    GACATGGTGG ACGTGCTGCT GCAGTTCGCT GACAATCCCA ACCTTGAGGT
    CAAGCTCAAG AGGGAAGGTG TCAAGGCATT CACTCAGGAC CTCATCGCTG
    GCGGCACAGA GAGCTCGGCG GTGACCGTGG AGTGGGCGCT GTCGGAGCTC
    CTGAAGAAGC CGGAGGTGTT CGCCAAGGCC ACCGAGGAGC TGGACCGCGT
    CGTGGGCCGC GGCCGCTGGG TCACGGAGAA GGACGTCCCG AGCCTCACCT
    ACGTGGACGC CATCGTGAAG GAGACCATGC GGCTGCACCC GGTGGCGCCC
    ATGCTGGTGC CCCGCCTGTC CCGCGAGGAC ACGTCCGTCG ACGGCTACGA
    CATCCCCGCC GGCACGCGGG TGCTCGTCAG CGTGTGGACC ATCGGCCGCG
    ACCCCAAGCT GTGGGACGCG CCGGAGGAGT TCATGCCGGA GAGGTTCATC
    GGCAACAAGA TCGACGTGAA GGGGCAGGAC TTCGAGCTGC TGCCGTTCGG
    GTCGGGCCGG CGGATGTGCC CCGGCTACAG CCTTGGGCTG AAGGTGATCC
    AGCTGAGCCT CGCCAATCTG CTGCACGGCT TCGCGTGGAG GCTGCCCGAC
    GGCGTGACGA GGGAGCAGCT GAGCATGGAG GAGATCTTCG GCTTGTCGAC
    GCCGCGCAAG TTCCCGCTTG AGGCTGTCGT CGAGCCCAAG CTGCCCGCTC
    ACCTCTATGC TGCTGCCTGA TGTGATATGC CTTTGATGAT GTGCGTGTGT
    ACGTTCTGTG TCTCTTGACT GTACTGTAGG CACTGCTCCT GTCGCGGTCC
    AACATTAAGC TTGCAGTGTA TTGCTAGCGT TGTTACTTAT TATGCATCCT
    GTGCTGCCTT TGTAGAGCTG AATGTAATAG GGCAAGTGTG AGTCAATAAT
    ATGCTTGATA ATAAGGTGTT ATGCG

    Gene models with high sequence identity

    1. AT5G07990.1 [+] show detail - Cytochrome P450 superfamily protein
      E-value: 7e-115; Score: 411.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Cytochrome P450, conserved site 0
    PatternScan Pyrokinin, conserved site 0
    HMMPanther FLAVONOID 3-HYDROXYLASE 3.3e-214
    HMMPanther Cytochrome P450 3.3e-214
    FPrintScan Cytochrome P450, E-class, group I 7.9e-46
    FPrintScan Cytochrome P450, E-class, group I 7.9e-46
    FPrintScan Cytochrome P450, E-class, group I 7.9e-46
    FPrintScan Cytochrome P450, E-class, group I 7.9e-46
    FPrintScan Cytochrome P450, E-class, group I 7.9e-46
    FPrintScan Cytochrome P450, E-class, group I 7.9e-46
    FPrintScan Cytochrome P450, E-class, group I 7.9e-46
    FPrintScan Cytochrome P450, E-class, group I 7.9e-46
    FPrintScan Cytochrome P450, C-terminal 0.00000000034
    FPrintScan Cytochrome P450, C-terminal 0.00000000034
    FPrintScan Cytochrome P450, C-terminal 0.00000000034
    Gene3D Cytochrome P450 4.6e-127
    HMMPfam Cytochrome P450 3e-96
    superfamily Cytochrome P450 1.6e-130

    See the detailed result >

    AT5G07990.1

    Model type
    Protein coding
    Short Description
    Cytochrome P450 superfamily protein
    Curator Summary
    Required for flavonoid 3' hydroxylase activity.
    Computational Description
    TRANSPARENT TESTA 7 (TT7); CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 706, subfamily A, polypeptide 6 (TAIR:AT4G12320.1); Has 35179 Blast hits to 34934 proteins in 1774 species: Archae - 51; Bacteria - 4733; Metazoa - 12156; Fungi - 7299; Plants - 9637; Viruses - 3; Other Eukaryotes - 1300 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR