K01518

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01518

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K01518

Determination of introduced cDNA(s)

  • J013073K09 - Rice Full-length cDNAs - Original: J013073K09

    full reading [+] show sequence

    Nucleotide sequence: J013073K09 - full reading 
    GAGTAGACTA GTAGTAGTAG AAGTTGTGCG TTTGTGTTGT TCTTCGCCGG 
    CGCCGCCGCC CATGGCCTCT TCCATGGCCG CCACCGCCAC CCTCTCGCCG 
    CCGGTTTTAT CCGCCGAGAG GCCGACTGTC CGCGGCGGCC TCTTCTTGCC 
    CCCTTCGCCG GCGACCTCCC GCTCTCTCCG CCTCCAATCC GCCCGCCGCT 
    GCGGCATCTC GCCGGCGACC AGGAAGCCAC GCTCCTTGCC TCGAGCAGCC 
    AAGGTTGTTG TGGCTGTGAA GGCTGATCCT TTGAAGGTCA TGATAGCAGG 
    GGCTCCAGCA TCTGGAAAGG GAACGCAGTG TGAGCTCATC AAGAGCAAAT 
    ATGGTCTGGT GCACATTTCT GCTGGAGATT TGCTAAGGGC AGAAATTGCT 
    GCAGGCAGTG AGAATGGGAA GCGAGCTAAG GAATTTATGG AGAAGGGTCA 
    GCTGGTTCCT GATGAGATTG TTGTTAATAT GGTGAAGGAA CGCCTTCTGC 
    AACCAGATGC TCAGGAAAAG GGTTGGTTGT TGGATGGGTA CCCAAGAAGC 
    TATTCGCAAG CGATGGCGCT GGAAACTCTT AATATCCGAC CTGACATTTT 
    CATTCTTTTG GATGTTCCAG ATGAACTTCT TGTTGAAAGG GTAGTTGGGA 
    GACGGCTTGA TCCTGTAACT GGGAAAATAT ACCATCTAAA GTATTCCCCA 
    CCGGAGAATG AAGAAATCGC TTCAAGGCTT ACACAGAGAT TTGATGATAC 
    AGAAGAAAAG GTTAAGCTGA GGTTACAGAC TCATTATCAA AATGTAGAAT 
    CCTTGCTATC AATTTACGAA GATGTGATAG TTGAGGTAAA AGGGGATGCT 
    TTGGTGGATG ATGTGTTTGC TGAGATCGAC AAGCAGCTGA CTTCTAGCCT 
    TGATAAGAAA ACAGAAATGG TGGCTAGCGC ATGAGCAAAA GATCTGTGCC 
    GATTGAACGT GCTCAGATTC ACTTATTTTA TACCTTTCCA TGTAGTTGGA 
    AATTGGAAGT ATGGGAATTT TGGTTTGAAG AATCCCATTA TTGTTGTAGA 
    CAAATGGAAG TGACAAAGCA TCGACAGGAT GAATGTTAGA AATCTTTCTA 
    TCATACCTTT GATGTACATG CATAGCTGCT GTCCTGTAAA CACCTCTACC 
    GAAGAAATGG TTAGGAATGT ATTTGATATA CAACCCTAAT GAAAGGGTTG 
    ACTTCATTTG ATTGTATTTG CGGAGCCCTA GCAGCTGTTT GTTTCTACTT 
    TCTACTGCTT CTGGGAGTAT CTGTATATGT ATCTACCCTA TAGATGTTTC 
    TGATGCTAAG TCAAAACATG TTATGTGATG ATTCTGTGCT ACTATAAACT 
    AGATATCTGG CTCTAAAACA CAACAGGCAA TGCTTATATC AAGCAACTAC 
    AATATGTATG ATCTTGTATG AAGCATTGAG CCC

    Gene models with high sequence identity

    1. AT5G47840.1 [+] show detail - adenosine monophosphate kinase
      E-value: 2e-86; Score: 317.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.3e-67
    PatternScan Adenylate kinase 0
    HMMPanther ADENYLATE KINASE 1.2e-98
    HMMPanther Adenylate kinase 1.2e-98
    HAMAP Adenylate kinase 27.766
    FPrintScan Adenylate kinase 1.3e-22
    FPrintScan Adenylate kinase 1.3e-22
    FPrintScan Adenylate kinase 1.3e-22
    FPrintScan Adenylate kinase 1.3e-22
    superfamily P-loop containing nucleoside triphosphate hyd 1.5e-53
    superfamily Adenylate kinase, active site lid domain 1.6e-09
    HMMTigr Adenylate kinase, subfamily 8e-96
    HMMPfam Adenylate kinase 4.4e-52
    HMMPfam Adenylate kinase, active site lid domain 2.7e-05

    See the detailed result >

    AT5G47840.1

    Model type
    Protein coding
    Short Description
    adenosine monophosphate kinase
    Computational Description
    adenosine monophosphate kinase (AMK2); FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, ATP binding, adenylate kinase activity, phosphotransferase activity, phosphate group as acceptor; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Adenylate kinase, active site lid domain (InterPro:IPR007862), Adenylate kinase, subfamily (InterPro:IPR006259), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: adenylate kinase family protein (TAIR:AT5G35170.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR