K01518

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01518

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K01518

Determination of introduced cDNA(s)

  • J013073K09 - Rice Full-length cDNAs - Original: J013073K09

    full reading [+] show sequence

    Nucleotide sequence: J013073K09 - full reading
    GAGTAGACTA GTAGTAGTAG AAGTTGTGCG TTTGTGTTGT TCTTCGCCGG 
    CGCCGCCGCC CATGGCCTCT TCCATGGCCG CCACCGCCAC CCTCTCGCCG
    CCGGTTTTAT CCGCCGAGAG GCCGACTGTC CGCGGCGGCC TCTTCTTGCC
    CCCTTCGCCG GCGACCTCCC GCTCTCTCCG CCTCCAATCC GCCCGCCGCT
    GCGGCATCTC GCCGGCGACC AGGAAGCCAC GCTCCTTGCC TCGAGCAGCC
    AAGGTTGTTG TGGCTGTGAA GGCTGATCCT TTGAAGGTCA TGATAGCAGG
    GGCTCCAGCA TCTGGAAAGG GAACGCAGTG TGAGCTCATC AAGAGCAAAT
    ATGGTCTGGT GCACATTTCT GCTGGAGATT TGCTAAGGGC AGAAATTGCT
    GCAGGCAGTG AGAATGGGAA GCGAGCTAAG GAATTTATGG AGAAGGGTCA
    GCTGGTTCCT GATGAGATTG TTGTTAATAT GGTGAAGGAA CGCCTTCTGC
    AACCAGATGC TCAGGAAAAG GGTTGGTTGT TGGATGGGTA CCCAAGAAGC
    TATTCGCAAG CGATGGCGCT GGAAACTCTT AATATCCGAC CTGACATTTT
    CATTCTTTTG GATGTTCCAG ATGAACTTCT TGTTGAAAGG GTAGTTGGGA
    GACGGCTTGA TCCTGTAACT GGGAAAATAT ACCATCTAAA GTATTCCCCA
    CCGGAGAATG AAGAAATCGC TTCAAGGCTT ACACAGAGAT TTGATGATAC
    AGAAGAAAAG GTTAAGCTGA GGTTACAGAC TCATTATCAA AATGTAGAAT
    CCTTGCTATC AATTTACGAA GATGTGATAG TTGAGGTAAA AGGGGATGCT
    TTGGTGGATG ATGTGTTTGC TGAGATCGAC AAGCAGCTGA CTTCTAGCCT
    TGATAAGAAA ACAGAAATGG TGGCTAGCGC ATGAGCAAAA GATCTGTGCC
    GATTGAACGT GCTCAGATTC ACTTATTTTA TACCTTTCCA TGTAGTTGGA
    AATTGGAAGT ATGGGAATTT TGGTTTGAAG AATCCCATTA TTGTTGTAGA
    CAAATGGAAG TGACAAAGCA TCGACAGGAT GAATGTTAGA AATCTTTCTA
    TCATACCTTT GATGTACATG CATAGCTGCT GTCCTGTAAA CACCTCTACC
    GAAGAAATGG TTAGGAATGT ATTTGATATA CAACCCTAAT GAAAGGGTTG
    ACTTCATTTG ATTGTATTTG CGGAGCCCTA GCAGCTGTTT GTTTCTACTT
    TCTACTGCTT CTGGGAGTAT CTGTATATGT ATCTACCCTA TAGATGTTTC
    TGATGCTAAG TCAAAACATG TTATGTGATG ATTCTGTGCT ACTATAAACT
    AGATATCTGG CTCTAAAACA CAACAGGCAA TGCTTATATC AAGCAACTAC
    AATATGTATG ATCTTGTATG AAGCATTGAG CCC

    Gene models with high sequence identity

    1. AT5G47840.1 [+] show detail - adenosine monophosphate kinase
      E-value: 2e-86; Score: 317.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.3e-67
    PatternScan Adenylate kinase 0
    HMMPanther ADENYLATE KINASE 1.2e-98
    HMMPanther Adenylate kinase 1.2e-98
    HAMAP Adenylate kinase 27.766
    FPrintScan Adenylate kinase 1.3e-22
    FPrintScan Adenylate kinase 1.3e-22
    FPrintScan Adenylate kinase 1.3e-22
    FPrintScan Adenylate kinase 1.3e-22
    superfamily P-loop containing nucleoside triphosphate hyd 1.5e-53
    superfamily Adenylate kinase, active site lid domain 1.6e-09
    HMMTigr Adenylate kinase, subfamily 8e-96
    HMMPfam Adenylate kinase 4.4e-52
    HMMPfam Adenylate kinase, active site lid domain 2.7e-05

    See the detailed result >

    AT5G47840.1

    Model type
    Protein coding
    Short Description
    adenosine monophosphate kinase
    Computational Description
    adenosine monophosphate kinase (AMK2); FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, ATP binding, adenylate kinase activity, phosphotransferase activity, phosphate group as acceptor; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Adenylate kinase, active site lid domain (InterPro:IPR007862), Adenylate kinase, subfamily (InterPro:IPR006259), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: adenylate kinase family protein (TAIR:AT5G35170.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR