K01540

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01540

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01540

Determination of introduced cDNA(s)

  • J013029P13 - Rice Full-length cDNAs - Original: J013029P13

    full reading [+] show sequence

    Nucleotide sequence: J013029P13 - full reading 
    GGGCTTACCA AGAAGCTGGT CTGCTGGTGA TGGCACCTGA ATTATCATTA 
    GTGTATGTTC ATTCATCTGT GCTCAGGTAC ATATTATGCT TTGCCTTGAA 
    GCGCAGAAGT AGGTAAAAAA AATCCTAGTT TTTTTTTTTG AACGGAAAAA 
    ATATCCTAGT TAGAGCGATA GGCTGATTGT CAGGGCATAC ACTACTTGGT 
    TCTTGACTCT TTTTTTTTTC TTTGATGAAT CCTAGTTTTG CTTTTATTTT 
    TAAGCCAAAA TTTCACATCT GTAACGGCTC CATGTTCTAA GCTGCAACAG 
    ATGGGTCTCC ACATTTGTAA CTGTGGGTTG TAACGACTGC TCTAACCATT 
    ATAGATGTAG GGTTCTGTGC TAGTGTTCAC TTGCAATACA ATTGCAATTG 
    CATTCCTGAA ATCATATTTT CTTTTTAGAG AATGAAATGA AATTCATTTC 
    AGCTTTTGTT TTAAGGAAAC TACAACCAAT TATTGAAGAG GTTGCAGGTT 
    GAAGGACTCC GAATTCCCGT AATCAGCTAA AATTCAAAAA ATATGGGCAT 
    CCAAATCAGT CATAGGATTA TTTGAACCAG GTGGGTAATT GGAATGTTCC 
    TTTATTGTTC TTCTATCCTC ATGCTTTTTC CCGAATGTGG ACTAGGCAGA 
    ATAACACAGT ATCTAACCTA ACCGATTTGA TACTGATCTA CTGTCCATGG 
    AGAAGGAATG TAAGGCATAG GTGCACTTAC TTTTGATGGT TCTGAATTTT 
    CGTCCAGTCC AGGCATAAGT ACTATTTTTG CTGGTCATAG TTGGTCAATA 
    CCTGGAATAG GTTTGGAAAT TTCAGGTTTT CAAATAATAA TTAGATTATC 
    AAGTAGCTTT GCAGACGATT TCCGGTCATA TAAACAACTT GTTAAATTTT 
    ATTTATCAGT TAAAAAACAA ATATGGGTTT GAATTCACGA AAGCAATACA 
    AACTTCTCAC CCATTCCCAA ACGGTCAGAT TAGGTTGTCC AACAAACTCT 
    AATTCTGTCC ACTGATTTTT TTTTCAGTTT ATGTCTCAGT CTAATGTTTT 
    ATCAGCAGCT GACATCCTTG ATGTAATCCT CTCTATTTGA AACAGAGTTG 
    CACCTCCACT TCCTATTTTC TAAATGAAAA ATCTTTCTAT GATTGGTCAA 
    GTGCTGTTGC TATTTCTCTG CTGATAAACA TCAGTGATGA ATCTTGATAC 
    TGACTCTTAT TTATTTTTTT CAAGAAACAT CCAGAAAATA AATATATGTG 
    CCCTGCTTCT CACTGTTCCA TTATCATCCT AGAATAATCA TACCCTCTCT 
    CTTTCTCCAA ATGATGGTCA CTTTGATAAA AAAAACAGGC CCCATATTTA 
    ACACATGCTT AACCTATAGC AACCTGATTG ATTTACAAGT TTTTTTTCGG 
    TCAATTTGTA CGAAATACAC GTTACCAAGG AGCATATCCT GTTACAATCA 
    TCTGACTCTC TGTGATTGAA ACCTTGTCTC TGAAATGCTT GAGGGCACAG 
    CAATAAGTAT TGAACAAATG TGTGATTCAT GGATACATAC GGTGTACTGA 
    AAGTGACACC AAGCAAGAAT TAGTATCATG GGCTCCAAAG ACACCTGTGC 
    TCATTCTGTT GGTTCTCTAC ACATGTTTTA GAATAAATAA ATAAAATTAG 
    GCCATATTTG CACTGAAATG TCTGCCATAG GGAGGTGATG CCAAGATGTC 
    CATTTCATTC AGACAGGAGT GCTAGATGAT TTCCCAAGTA GCCCCTACCA 
    CATTTTATTG CCCTCTTTAT TAAGCCCTCT AGCTAGCTAT AACACCTTAC 
    ACACACCAAG ATTAATTATC TATCCACAGG GACAGAGAAG AAGAAGAAGA 
    AGAAGAAGAC TATCATCTTG AGCTTATTCT TCCATTTGCT CCATCTTGAA 
    ATCATCAGTA ACCATGGCTA GGAAGTGCTC TAGCTGTGGG AACAATGGCC 
    ACAACTCCAG GACTTGCAGT GGCCAAAGAG TTCTTGATCA CAGCATCAGC 
    AGCAGCAACA GTGGTAGTAC TACTGCTGCT GCTGCTACTG CCTGTGGTGG 
    CTTGAGGTTG TTTGGGGTGC AGCTGCAGGT AGGAGGAGGC TCATCTCCTC 
    TGAAGAAGTG CCTCAGCATG GAGTGCTTGG CATCACCAGC ATACTATGGA 
    GCTTCTGCCT CGCCGTCGGT TTCGTCGTCG TCATCTTCGC TTGTTTCGAT 
    TGAGGAGAAC ACTGAGAGGG TCTCCAATGG GTACCTCTCT GATGGGCTCA 
    TGGGAAGGGT TCAGGAGAGG AAGAAAGGAG TTCCATGGAC TGAGGAAGAA 
    CACCAGATGT TCCTCGCCGG CCTTGACAAG CTCGGAAAAG GCGACTGGCG 
    GGGCATTTCT CGGCACTTCG TCACTACCCG GACTCCAACG CAGGTCGCCA 
    GCCATGCCCA GAAGTACTTC CTGAGGCAGA ACAGTATGAC ACAGAAGAAG 
    AGGAGGTCCA GCCTCTTTGA TGTGGTTGAA GGTATCAAGA GGGCAGCAGC 
    AATGCCCATT TCAGGATCTG CATCTGAACT GCAGATCCCC GGCATGTCGA 
    TCGGTGTCGG CGTGGTGAAG GAGGAGGTTG TCCTGCCTCC ATGTCTGAAC 
    CTGATGAGTA ACAGTTCATC AGCATCACAG CACTCACCTT CCCTGACATT 
    GCTGGCAAAT CCTCAGGTGC AGCTCCAGAT GCCTGACCTG GAGCTAAAGA 
    TGTCCACATC CCGGTTATCT GACCAATCCG GTCCGTCGCC GAGCACGCCT 
    TTCTTCGGGA CCATCAGAGT TACCTGATCT TCATCTTCAG TGCTCCTCAT 
    AAAAGTGGAG GAGTTCAGAA AAGGGTGTTT TGGAGATCAT GTACCTCAAT 
    CAGAAAGTTA GGTGTTACTG TAATGTTAGA ATGACAATCA GTGATCAGCC 
    CATGCACAAA ATAAGATAAG AAAAGCAAAG AAGAAATGGT TTTTATCATA 
    TCATACCATA CTTTTGCAAT CACCTTATAG CTTTATGTTG ACACAAAGGC 
    ATGGCAAGGG TGGTTGCTGG TTTGGATTTT CAGAGCCTGG AGAAGGTGAA 
    AGATGAGCTC ACAATATTCA GTTTGCAGTG GGCAATGACA AGGACAGGCA 
    AAAACCTCAG CTACCAAAAA TTTCTTCTTT CCTTTTATTC ACTGCATACA 
    CACACATGAT CATCTCCTTG TACAGCACAT GAGGTTAATT AGCTATGCAT 
    GCATGCATGG AACCAATTAC AAAAATGTCT AAATTAATTG GTTTTTCTAG 
    TACAAGTTAA TTTCTTTTCT CTTTTTCTGA AAGTGAGGTT CTTGTACAGG 
    TTGTGATCGA TGTTTACCTG TCGTTTGGTG TGCTGCCAAT AAAGATCTAT 
    TAATCATT

    Gene models with high sequence identity

    1. AT5G56840.1 [+] show detail - myb-like transcription factor family protein
      E-value: 5e-36; Score: 150.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, CCHC-type 8.68
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 19.18
    superfamily Homeodomain-like 1.6e-17
    HMMTigr Myb-like DNA-binding domain, SHAQKYF class 2e-25
    HMMPfam Myb, DNA-binding 0.0000000000012
    HMMPanther TRANSCRIPTIONAL ADAPTOR 2 (ADA2)-RELATED 0.00071
    HMMSmart SANT, DNA-binding 0.000000000015

    See the detailed result >

    AT5G56840.1

    Model type
    Protein coding
    Short Description
    myb-like transcription factor family protein
    Computational Description
    myb-like transcription factor family protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Zinc finger, CCHC-type (InterPro:IPR001878), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb-like transcription factor family protein (TAIR:AT5G47390.1); Has 1025 Blast hits to 1022 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 894; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR