K01546

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01546

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01546

Determination of introduced cDNA(s)

  • J033035N13 - Rice Full-length cDNAs - Original: J033035N13

    full reading [+] show sequence

    Nucleotide sequence: J033035N13 - full reading 
    AAAAAACCCC GTCTCGTCTC GCCTCGCCTC GCCTCGCCCT GCGCGAGAGG 
    TAGAAATAGG AAGGGAAACA GGAGCAGCGC GTGCCGCCTG GGCCTCCTCC 
    CGCTCCCCCT CCCCAACCGC CGAACCCTTC ACATTATCGG TGCGCGCGCG 
    CGCGAGAGGG GGGGCGCCCT GCCGCGGGAG TTCGCCGTGG TGGTGCGGAC 
    GGCGAGGGGG CTCTGTTGGG TTGTCGGCGA TGGCGATCCG GGGCCCGGAG 
    GCGTCGTCTT TCTTCCCCCT CACGCTCGTC TTCTCCGTCG GCTTCTTCTG 
    CGCCCGCTTC TTCCTCGACC GCCTCGTCTA CAAGCCACTG GCAGCTTACT 
    GTTTCAGTAG CAAGGCTTCT AAGCTGATGA ATGATGAGGT CAGGCAAGCA 
    AAGATTGTCA AGTTCTCTGA GTCGATTTGG AAGCTGACAT ACTATGGTTC 
    TGTTCAAGCA TGGGTCCTCT TGATAATAAA GCAGGAACCC TGGTCGTTAG 
    ATACAATGCA ATACTTCGAG GGCTGGCCAA ATCAATACAT GACGTCCTCA 
    TTGATGCTTT TCTACATGTG CCAGTGTGGA TTTTATATCT ACAGCATTTT 
    TGCTCTCGTT GCCTGGGAGA CCCGCAGAAA AGATTTTGCT GTGATGATGT 
    CTCATCATGT TGTAACATCT ATTCTGATCG GATATGCATA TCTGACTGGA 
    TTTTTTCGGA TTGGGACAAT TATTCTGGCT TTGCATGATG CGAGTGATGT 
    GTTTCTTGAG ACCGCCAAAC TGTGCAAATA CACAGAAAAG GAGCTCGGGG 
    CTAGCTTGTT TTTTGGCCTT TTTGCTCTCT CCTGGCTTCT GTTACGACTG 
    ATTTACTTCC CATTTTGGAT AATCAAAACA TCAAGCTATC AGTCCATCAT 
    ATCTTTGAGG AAGCTGGAGA AATTCCCAAC AACATTGTAT TACATTTTCA 
    ACACAATGCT CCTCACTTTA CTTGTGTTCC ATATTTACTG GTGGAAACTC 
    ATATGCTTAA TGATAATGAA ACAATTGAAC AATAAAGGAC AGGTTGGAGA 
    GGATGTTCGA TCAGATTCTG AGGATGAAGA GTGATGGAGC GATTCTTTGA 
    CAACTGTGAT GTGTGCCATT TCATTGCTGA TACTTTTCTG TGCCTGCTTT 
    TGGTACTAAA TTGTTTTGGT CTTGGCAAGC TTGGAGCATA GATAAGAAAG 
    ATTTGCCTCT GTATATTGCC CTGTGGTATC AGAAATGGCT AGACCAAGAA 
    CAGAGCAGGT TCTATACATA ACGGGTATAG CTAGCAACTT ACTTGAAGAT 
    CCCTTCATAA TTTTTGGTCC GTCTTTCTTT GTTATTAGAA AAAGGCATGA 
    GAGGTCGTTT TCTGTAGCTT CTCCCAATGC TTACAGACCC CTCTGTACAA 
    TGTTTTTGTA TACTTTGACT GTGAGTAGGT TTAGTTCTAA TTCATGGGAA 
    TAAATTGATT TTTTCTACCA GGAGTAATTC TGGCTAGC

    Gene models with high sequence identity

    1. AT3G19260.1 [+] show detail - LAG1 homologue 2
      E-value: 4e-79; Score: 292.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther LONGEVITY ASSURANCE FACTOR 1 (LAG1) 9.2e-97
    ProfileScan TRAM/LAG1/CLN8 homology domain 19.122
    HMMPIR Longevity assurance, LAG1/LAC1 5.6e-59
    HMMSmart TRAM/LAG1/CLN8 homology domain 3.7e-63
    HMMPfam TRAM/LAG1/CLN8 homology domain 5.6e-39

    See the detailed result >

    AT3G19260.1

    Model type
    Protein coding
    Short Description
    LAG1 homologue 2
    Curator Summary
    LAG1 homolog . Loss of function mutant is sensitive to AAL-toxin. LOH2 is presumed to function in sphingolipid metabolism.
    Computational Description
    LAG1 homologue 2 (LOH2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to molecule of fungal origin; LOCATED IN: Golgi apparatus, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longevity assurance, LAG1/LAC1 (InterPro:IPR016439), TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: LAG1 longevity assurance homolog 3 (TAIR:AT1G13580.3); Has 1277 Blast hits to 1277 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 612; Fungi - 306; Plants - 183; Viruses - 3; Other Eukaryotes - 173 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR