K01547

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01547

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01547

Determination of introduced cDNA(s)

  • J013064F21 - Rice Full-length cDNAs - Original: J013064F21

    full reading [+] show sequence

    Nucleotide sequence: J013064F21 - full reading
    GGGCGGCAAC ACTGAAGCAA CCAAAATCTT ACAGCGGCGG CAGCCATGGC 
    GTCGTTAGGA GCTAACAGCC ATGGCCGAGT CCTGCACACC TGCACACTCT
    CCCCAAAGCC GGTTACAGCT TTGAGCAGAA GCATGGCGGC CATTCCTGGA
    CACCATGTTT TTCAGTCTCC ACGAGCTCGG ATTGCAGTGC GAGCTAGCAC
    CGAGCGTGCG ACCTGGCTGC CTGGGCTCGA TCCACCTCCT CACCTCGACG
    GCACATTACC TGGCGATTTC GGATTTGATC CCCTGGGTCT CGGGGAGGAA
    CCGGCAAACT TGAAATGGTA TGTTCAAGCC GAACTTGTGC ACTGCCGGTT
    TGCGATGGCA GGGGTTGCTG GCATCCTTGC GACTGATTTG ATACGTGTAT
    CAGGAATCAA CAACCTGCCA GTGTGGTTTG AAGCAGGTGC AACAAAATTC
    GACTTCGCTA ACACCACGGC ACTCTTCTTT GTCCAGCTTC TCTTGATGGG
    ATTTGCTGAA ACCAAGAGGT ACATGGACTT TATCAATCCA GGATCACAAG
    CAGAGGAAGG AACATTCCTT GGTATCGAGG CTGCACTTGC AGGTTCACAG
    CCAGGCTACC CTGGGGGTCC ACTGTTTAAT CCACTAGGAC TGGCCAAGGA
    TATAGAGAAT GCAGATGAAG CGAAACTGAA AGAAATCAAG AATGGGAGGT
    TGGCTATGGT TGCTATGCTT GGGTTTATTG TGCAAGCATC TGTGACTCAT
    GTTGGACCAA TCGACAATCT TTTGACACAT CTTTCAGACC CGTTCAACAA
    AAATATCATC CACACCCTCT CCTCTTCTTG AAAATATCCT GGACCGTCAA
    ACTTTTTGTT CCTTTCTTCA TCTTAATTAA TCTATCAATC AACACATTCA
    CAATGTTCGT GGACAACATA AGTAACTCAC TACGCAATTG CCAAGTCCAT
    GTGTTATGAA AATGGAGATT CACCGGATGC ATAACTACAT TAATTGTTTA
    TGGAAAAGGA AATTTCCTTC CCTAGC

    Gene models with high sequence identity

    1. AT1G45474.2 [+] show detail - photosystem I light harvesting complex gene 5
      E-value: 1e-80; Score: 296.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Chlorophyll A-B binding protein 1.9e-103
    superfamily Chlorophyll a-b binding protein 6.9e-62
    HMMPfam Chloroa_b-bind 1.4e-50

    See the detailed result >

    AT1G45474.2

    Model type
    Protein coding
    Short Description
    photosystem I light harvesting complex gene 5
    Curator Summary
    Encodes a component of the light harvesting complex of photosystem I.
    Computational Description
    photosystem I light harvesting complex gene 5 (LHCA5); FUNCTIONS IN: pigment binding; INVOLVED IN: photosynthesis, light harvesting in photosystem I, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast thylakoid membrane, photosystem I antenna complex, chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light-harvesting chlorophyll-protein complex I subunit A4 (TAIR:AT3G47470.1); Has 2339 Blast hits to 2263 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2004; Viruses - 0; Other Eukaryotes - 331 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR