K01547

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01547

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01547

Determination of introduced cDNA(s)

  • J013064F21 - Rice Full-length cDNAs - Original: J013064F21

    full reading [+] show sequence

    Nucleotide sequence: J013064F21 - full reading 
    GGGCGGCAAC ACTGAAGCAA CCAAAATCTT ACAGCGGCGG CAGCCATGGC 
    GTCGTTAGGA GCTAACAGCC ATGGCCGAGT CCTGCACACC TGCACACTCT 
    CCCCAAAGCC GGTTACAGCT TTGAGCAGAA GCATGGCGGC CATTCCTGGA 
    CACCATGTTT TTCAGTCTCC ACGAGCTCGG ATTGCAGTGC GAGCTAGCAC 
    CGAGCGTGCG ACCTGGCTGC CTGGGCTCGA TCCACCTCCT CACCTCGACG 
    GCACATTACC TGGCGATTTC GGATTTGATC CCCTGGGTCT CGGGGAGGAA 
    CCGGCAAACT TGAAATGGTA TGTTCAAGCC GAACTTGTGC ACTGCCGGTT 
    TGCGATGGCA GGGGTTGCTG GCATCCTTGC GACTGATTTG ATACGTGTAT 
    CAGGAATCAA CAACCTGCCA GTGTGGTTTG AAGCAGGTGC AACAAAATTC 
    GACTTCGCTA ACACCACGGC ACTCTTCTTT GTCCAGCTTC TCTTGATGGG 
    ATTTGCTGAA ACCAAGAGGT ACATGGACTT TATCAATCCA GGATCACAAG 
    CAGAGGAAGG AACATTCCTT GGTATCGAGG CTGCACTTGC AGGTTCACAG 
    CCAGGCTACC CTGGGGGTCC ACTGTTTAAT CCACTAGGAC TGGCCAAGGA 
    TATAGAGAAT GCAGATGAAG CGAAACTGAA AGAAATCAAG AATGGGAGGT 
    TGGCTATGGT TGCTATGCTT GGGTTTATTG TGCAAGCATC TGTGACTCAT 
    GTTGGACCAA TCGACAATCT TTTGACACAT CTTTCAGACC CGTTCAACAA 
    AAATATCATC CACACCCTCT CCTCTTCTTG AAAATATCCT GGACCGTCAA 
    ACTTTTTGTT CCTTTCTTCA TCTTAATTAA TCTATCAATC AACACATTCA 
    CAATGTTCGT GGACAACATA AGTAACTCAC TACGCAATTG CCAAGTCCAT 
    GTGTTATGAA AATGGAGATT CACCGGATGC ATAACTACAT TAATTGTTTA 
    TGGAAAAGGA AATTTCCTTC CCTAGC

    Gene models with high sequence identity

    1. AT1G45474.2 [+] show detail - photosystem I light harvesting complex gene 5
      E-value: 1e-80; Score: 296.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Chlorophyll A-B binding protein 1.9e-103
    superfamily Chlorophyll a-b binding protein 6.9e-62
    HMMPfam Chloroa_b-bind 1.4e-50

    See the detailed result >

    AT1G45474.2

    Model type
    Protein coding
    Short Description
    photosystem I light harvesting complex gene 5
    Curator Summary
    Encodes a component of the light harvesting complex of photosystem I.
    Computational Description
    photosystem I light harvesting complex gene 5 (LHCA5); FUNCTIONS IN: pigment binding; INVOLVED IN: photosynthesis, light harvesting in photosystem I, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast thylakoid membrane, photosystem I antenna complex, chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light-harvesting chlorophyll-protein complex I subunit A4 (TAIR:AT3G47470.1); Has 2339 Blast hits to 2263 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2004; Viruses - 0; Other Eukaryotes - 331 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR