K01606

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01606

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01606

Determination of introduced cDNA(s)

J023054P13 - Rice Full-length cDNAs - Original: J023054P13

full reading [+] show sequence

GGCCATATCT GTCTCCCTCT CCCCTTCTCA TCTCCCGAGA AGTAGTAGTA 
GTAGTCGTCT AGTAGTAGTA GCCTACCACC ACCTCCCTCG GCGAGCGGGT 
CCCACCGGCC ACCGTCCGTA CTCCGGTGAG CCGGCATTGC GTGTTCCGGG 
ATGGCGTCGC CGTACGACCA CCAGTCGCCG CATGCGCAGC ACCCGTCGGG 
GTTGCCGAGG CCGCCGGGGG CGGGGGCGGG TGCGGCGGCG GGCGGGTTCG 
CGCGGGGGCT GATGAAGCAG CCGTCGCGGC TGGCGTCCGG GGTGAGGCAG 
TTCGCGTCGA GGGTGTCGAT GAAGGTGCCG GAGGGGGTGG GGGGGTGCGG 
CCCGGTGGCG GGAGGATGAC GCGGATGCAG TCCAGCGCGC AGGTGGGGCT 
CCGGGGGCTC CGCTTCCTCG ACAAGACGTC CGGCGGGAAG GAGGGGTGGA 
AGTCCGTCGA GCGCCGCTTC GACGAGATGA ACCGCAACGG CCGCCTCCCC 
AAGGAGAGCT TCGGCAAGTG CATCGGCATG GGGGACTCCA AGGAGTTCGC 
CGGCGAGCTG TTCGTGGCGC TGGCGCGGCG GAGGAACCTG GAGCCGGAGG 
ACGGCATCAC CAAGGAGCAG CTCAAGGAGT TCTGGGAGGA GATGACCGAC 
CAGAACTTCG ACTCGCGGCT TCGCATTTTC TTTGACATGT GCGACAAGAA 
TGGCGATGGG ATGCTCACGG AAGATGAGGT CAAGGAGGTT ATTATACTGA 
GTGCGTCGGC GAACAAGCTG GCGAAGCTGA AGGGACACGC GGCGACGTAC 
GCGTCGCTGA TCATGGAGGA GCTGGACCCG GACGACCGCG GGTACATCGA 
GATCTGGCAG CTGGAGACGC TGCTGCGCGG CATGGTGAGC GCGCAGGCGG 
CGCCGGAGAA GATGAAGCGG ACGACGTCGA GCCTCGCGAG GACGATGATC 
CCGTCGCGGT ACCGGAGCCC GCTGAAGCGG CACGTGTCCA GGACGGTGGA 
CTTCGTGCAC GAGAACTGGA AGCGGATCTG GCTCGTCGCG CTGTGGCTCG 
CCGTCAACGT CGGCCTCTTC GCCTACAAGT TCGAGCAGTA CGAGCGGCGC 
GCCGCGTTCC AGGTGATGGG CCACTGCGTG TGCGTGGCCA AGGGCGCCGC 
CGAGGTGCTC AAGCTCAACA TGGCGCTCAT CCTCCTCCCC GTGTGCCGGA 
ACACGCTCAC CACGCTCAGG TCCACGGCGC TCAGCCACGT CATCCCCTTC 
GACGACAACA TCAACTTCCA CAAGGTGATC GCGGCGACCA TCGCCGCCGC 
CACCGCCGTC CACACGCTGG CGCACGTCAC CTGCGACTTC CCGAGGCTGA 
TCAACTGCCC CAGCGACAAG TTCATGGCGA CGCTGGGGCC GAACTTCGGG 
TACAGGCAGC CGACGTACGC CGACCTGCTG GAGAGCGCCC CCGGCGTCAC 
CGGCATCCTC ATGATCATCA TCATGTCCTT CTCCTTCACG CTGGCCACGC 
ACTCCTTCCG CCGGAGCGTC GTCAAGCTGC CGTCGCCGCT GCACCACCTC 
GCCGGCTTCA ACGCCTTCTG GTACGCGCAC CACCTCCTGG TGCTCGCCTA 
CGTCCTCCTC GTCGTGCACT CCTACTTCAT ATTCCTCACC AGGGAGTGGT 
ACAAGAAAAC GACATGGATG TACCTGATAG TCCCAGTGCT CTTCTATGCA 
TGCGAGAGAA CGATCAGAAA AGTTCGAGAG AACAACTACC GCGTGAGCAT 
CGTCAAGGCA GCGATTTACC CAGGAAATGT GCTCTCTCTT CACATGAAGA 
AGCCGCCGGG TTTCAAGTAC AAGAGCGGGA TGTACCTGTT TGTGAAGTGC 
CCTGATGTCT CTCCTTTCGA ATGGCATCCC TTCTCCATCA CTTCTGCACC 
TGGAGATGAC TACCTGAGTG TGCATATCCG TACACTAGGT GACTGGACGA 
CTGAACTCAG AAACCTGTTT GGGAAGGCTT GCGAGGCACA GGTTACTTCT 
AAGAAGGCTA CCCTTTCAAG ACTTGAAACT ACAGTTGTGG CGGACGCTCA 
GACAGAGGAT ACTAGGTTTC CTAAGGTCCT TATTGATGGG CCCTATGGTG 
CACCGGCGCA AAACTACAAG AAGTATGACA TTCTTTTGCT TATTGGTCTT 
GGAATTGGTG CTACTCCTTT CATCAGCATT CTGAAGGATC TGTTGAACAA 
CATTAAATCC AACGAAGAGG TGGAAAGCAT ACATGGTTCT GAGATAGGCA 
GCTTCAAGAA CAATGGGCCA GGAAGAGCTT ACTTCTACTG GGTGACCAGA 
GAGCAAGGGT CCTTCGAGTG GTTTAAAGGA GTCATGAACG ATGTCGCTGA 
AAGTGATCAC AATAATATTA TAGAGATGTA CAATTACCTG ACCAGCGTGT 
ATGAAGAAGG CGACGCAAGG TCAGCTTTGA TTGCCATGGT TCAGTCACTT 
CAACATGCCA AAAATGGTGT GGATATCGTC TCCGGCAGCA GGATTCGCAC 
ACATTTTGCG AGGCCTAACT GGAGAAAGGT GTTCTCTGAC TTGGCGAATG 
CCCACAAAAA CTCACGCATA GGTGTTTTCT ATTGTGGATC CCCTACACTC 
ACGAAACAAC TCAAGGATCT TTCAAAAGAA TTCAGCCAGA CAACCACAAC 
TAGATTCCAC TTCCACAAGG AAAACTTTTA AGACCGTACC AAAGGACGTC 
TAAACAGACT GCATATACTT GTATAGGAAA GAAATACGAT AGCATTGGGA 
TAGCAAATAT AGTCTTACAA GTTTTGCTCT ACGATGGATT GTACAAAATA 
TATGTTGAAA GCTAGTGTCA CCATCGTGCA TAGATTCTGG AATGTTTACA 
GATATATGTA TTGGAACAGT GGGAATGCAT GTTAGAAAAA TTGAGTTCC

Gene models with high sequence identity

AT5G60010.1 [+] show detail - ferric reductase-like transmembrane component family protein
E-value: 0; Score: 921.00

InterPro Scan Digest

Program	Description	E-value
superfamily	EF-hand	1e-18
superfamily	Riboflavin synthase-like beta-barrel	3.1e-17
superfamily	Ferredoxin reductase-like, C-terminal NADP-li	1e-11
Gene3D	EF-hand-like domain	6.1e-07
PatternScan	EF-Hand 1, calcium-binding site	0
ProfileScan	EF-HAND 2	11.389
ProfileScan	EF-HAND 2	5.085
ProfileScan	Ferredoxin reductase-type FAD-binding domain	13.842
HMMPanther	RESPIRATORY BURST OXIDASE	0
HMMPanther	NADPH OXIDASE	0
FPrintScan	Cytochrome b245, heavy chain	1.5e-20
FPrintScan	Cytochrome b245, heavy chain	1.5e-20
FPrintScan	Cytochrome b245, heavy chain	1.5e-20
FPrintScan	Cytochrome b245, heavy chain	1.5e-20
HMMPfam	Ferric reductase, NAD binding	9.5e-46
HMMPfam	NADPH oxidase Respiratory burst	1.2e-41
HMMPfam	FAD-binding 8	7.1e-30
HMMPfam	Ferric reductase-like transmembrane component, N-terminal	1.9e-15

See the detailed result >

AT5G60010.1

Model type: Protein coding
Short Description: ferric reductase-like transmembrane component family protein
Computational Description: ferric reductase-like transmembrane component family protein; FUNCTIONS IN: in 8 functions; INVOLVED IN: oxidation reduction; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), NADPH oxidase Respiratory burst (InterPro:IPR013623), Ferric reductase, NAD binding (InterPro:IPR013121), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: ferric reductase-like transmembrane component family protein (TAIR:AT3G45810.1); Has 1927 Blast hits to 1788 proteins in 283 species: Archae - 0; Bacteria - 154; Metazoa - 723; Fungi - 353; Plants - 523; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).
Link: InterPro Scan - TAIR