K01626

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01626

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
fruit (PO:0009001)
  • increased length (PATO:0000573)
    (Silique::Shape::long)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01626

Determination of introduced cDNA(s)

  • J013073C06 - Rice Full-length cDNAs - Original: J013073C06

    full reading [+] show sequence

    Nucleotide sequence: J013073C06 - full reading 
    GTTCCCGATT CCCACTGCGG AGAAGTCAAA TACGGCCACC TGGTTCGCTA 
    CAACCCAAGC CCACCGCCGC TGCGAAGCTG CCATTCGCCG ACGAACAGCT 
    CGCCGGAGAG GCTGCTTTCC CGGAGCTTTG AGCTTCTTGG ACTAGCTCTG 
    CTCGGATTCT TGCTTGGTTG GGATTATCAG GACATGATGG CAGCTGTTGA 
    AAATTGATGA CATGCTTATG TGGATATTCA CAAGTGAAAC TGTATTTGTT 
    GAACTGCAGA ATTAAGGCCA TCATAGTAGT TTTAGATTTC GGTAATGGGT 
    TGTTTTTGTA TATTTGGCAA GAGAAGGGCA ACCCGACAGC AAAGTTCTCA 
    GCATAATGAT GACCCCTCTG GTGATATGAA TATAACAAAA TTCACTTACA 
    AGGAGCTTTC AAGGGTTACT GAAAATTTTA GCCCGTCTAA TAAGATTGGT 
    GAGGGAGGTT TTGGATCTGT GTATAAGGGA AAGCTAAGGA ATGGAAAGCT 
    TGTTGCCGTC AAGGTGCTAT CTTTAGAGTC AAGACAGGGA GCGAAGGAAT 
    TTCTGAACGA ACTCATGGCA ATTTCAAACG TATCTCATGA AAATCTTGTC 
    AAGCTTTATG GCTATTGTGT GGAAGGAAAC CAAAGAATCC TTGTCTACAA 
    TTATCTTGAA AATAATAGCC TTGCACAAAC ACTTTTGGGT TATGGCCACA 
    GCAACATCCA GTTCAACTGG GCAACTCGAG TAAATATTTG TGTTGGCATC 
    GCCCGTGGAC TAACATACCT CCATGAAGTT GTAAATCCCC ACATTGTTCA 
    CCGGGATATC AAAGCAAGCA ATATACTTCT AGATAAAGAT CTTACGCCGA 
    AAATATCTGA TTTTGGTTTA GCAAAGCTTT TGCCTCCAGA TGCATCACAT 
    GTTAGCACAA GGGTTGCTGG AACATTAGGT TACTTGGCTC CAGAGTATGC 
    CATTCGAGGA CAAGTGACAC GGAAGTCAGA TGTTTATAGT TTTGGTGTTC 
    TGTTACTAGA AATAGTTAGT GGGAGATCCA ACACCAATAC AAGATTACCC 
    TATGAAGATC AGATACTTCT TGAAAGGACA TGGGTGCACT ATGAAGAGGG 
    TGATTTGGAG AAAATCATAG ACGCTTCTTT GGGTGATGAC TTGGATGTTG 
    CACAAGCCTG TATGTTCCTG AAAATTGGGC TTTTGTGTAC ACAAGATGTC 
    ACGAAACATC GACCCACAAT GTCGATGGTT GTCCGCATGC TAACAGGTGA 
    AATGGATGTT GAGCTGGCGA AGATCAGCAA GCCCGCAATA ATCAGTGACT 
    TTATGGATCT TAAGGTCAGG AGCATGAGGA AAGAAGTGGA CATAGTTTCA 
    TCCTCAACAT CCACATTGCT ATCTTCCATC ATGGCACACT CTTCTCCTTT 
    GTTGTCGCAA GAGACAACAG AAGCCTCCAT GACATTCACC GCGATATCAG 
    ATCGTGAGTG ACCCGAGGTT GAATGCAGAT ACGAAGATTG CATCGACAAA 
    AGGTAGTGTA GGAGAAATGT TTTCCAGAAA TCTTTTTGCT GGTTTGATTT 
    TTTTTTCGAT GTATAGATTT ACTTCATTTA TAGCCTGAAA AGCAGTCTAG 
    AGTGAAGAAA GTACATGATA GTATATCTTG TTTGTTCATG GAATGTCTCC 
    TGTTTTTGAA TGTGCAATGG ACACTTCTTC AGTTCTTAAT TGTACACGAC 
    ACCTTGTCTG CTGCTTGTGT TCTGAGATAA ATTGCC

    Gene models with high sequence identity

    1. AT1G16670.1 [+] show detail - Protein kinase superfamily protein
      E-value: 1e-124; Score: 443.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMSmart Serine/threonine-protein kinase domain 6.3e-36
    HMMSmart Tyrosine-protein kinase, catalytic domain 2.8e-39
    HMMPfam Serine/threonine-protein kinase-like domain 1.2e-47
    ProfileScan Protein kinase, catalytic domain 38.209
    Gene3D no description 1.8e-24
    Gene3D no description 3.4e-51
    HMMPanther RECEPTOR-LIKE SERINE/THREONINE KINASE 1.9e-177
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.9e-177
    superfamily Protein kinase-like domain 2.5e-83

    See the detailed result >

    AT1G16670.1

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Computational Description
    Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G09010.1); Has 119178 Blast hits to 117668 proteins in 4361 species: Archae - 113; Bacteria - 13232; Metazoa - 43958; Fungi - 10262; Plants - 33662; Viruses - 406; Other Eukaryotes - 17545 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR