K01636

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01636

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01636

Determination of introduced cDNA(s)

  • J033097K13 - Rice Full-length cDNAs - Original: J033097K13

    full reading [+] show sequence

    Nucleotide sequence: J033097K13 - full reading 
    GGTGGACGAC GACGCGAGGC CACTCGAAGC GGCATTTTGC ACCTAACCCC 
    CTAGAGTTAT CGGGAATCGC AAAGAGGGGG CCATCTCGAG TGGCTCGCCG 
    GCGGCGGCGG AGGCGGGGAG AGATGCTGCC CTACGCGACG GCGGCGGAGG 
    CGGAGGCGGC GCTGGGGAGG GCGATGACGG CGGCGGAGTC GCTGTGGTTC 
    AGGTACTCGG CGGGGATCCC GGACTACGTC CTCTTCTGGC ACAACATCCT 
    CTTCCTCTTC GTCGTCTTCA CGCTCGCGCC GCTCCCCGTC GCGCTCCTCG 
    AGCTCCGCGC GCCGGCCGCC GTGGGGCCGT TCAAGCTGCA GCCCAAGGTG 
    CGGCTCTCCC GGGAGGAGTT CTTCCGCTGC TACAGGGACG TCATGCGCCT 
    CTTCTTCCTC GTCATCGGCC CGCTCCAGCT CGTGTCCTAC CCTACCGTCA 
    AGATGGTGGG AATCCACACA GGGCTGCCAC TGCCGTCGCT GGGGGAGATG 
    GCGGCGCAGC TGCTGGTGTA CTTCCTGGTT GAGGACTACC TCAACTACTG 
    GATCCATCGG TTGCTACATG GGGAGTGGGG CTATGAGAAG ATCCACCGTG 
    TCCACCATGA GTTCACGGCA CCCATTGGAT TCGCCGCGCC ATATGCACAC 
    TGGGCTGAGG TGCTCATCCT CGGCATCCCC TCCTTTGTCG GGCCAGCGCT 
    TGCACCTGGT CACATGATCA CCTTCTGGCT CTGGATTGTA CTCCGCCAGA 
    TGGAGGCCAT AGAGACACAC AGCGGCTTTG ATTTCCCGTT CAACCTGACA 
    AAGTATATTC CATTCTATGG AGGCGCAGAA TACCATGATT ATCATCACTA 
    TGTTGGACGC CAGAGTCAGA GCAATTTCGC TTCTGTTTTC ACGTATTGTG 
    ATTATCTATA TGGAACCGAC AAAGGTTACA GATACCATAA GGCGTACCAA 
    GCAAAGATGA AGGCTCTGGG GCAAACGGAA GGCGAGAAAG CAGATAGCAA 
    TGGATTGAGC TACGCGAAGT TGGATTAAAC TGTCCTATAT ATAGCCAAAA 
    TCTGGAATGC CTCCCTGGTC ATTTTGTTCG TTACGGCTTG TGTAGTGTTT 
    TGATTTTGTT TCGATTTCTG TAGTAGTGTC GTGCTGCTGT GCCTTTTGTT 
    TTTGTGGCTG TGACTTGTGA GCATCCATGG AACTTGTTAC GCTGACCAAT 
    AACATTGTGA CTCGGGTAGT CTTTATGTGG TTTGCGCTC

    Gene models with high sequence identity

    1. AT4G12110.1 [+] show detail - sterol-4alpha-methyl oxidase 1-1
      E-value: 3e-114; Score: 408.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther C-4 METHYL STEROL OXIDASE 1.4e-138
    HMMPanther STEROL DESATURASE 1.4e-138
    HMMPfam Fatty acid hydroxylase 3.8e-17
    Coil coiled-coil 0

    See the detailed result >

    AT4G12110.1

    Model type
    Protein coding
    Short Description
    sterol-4alpha-methyl oxidase 1-1
    Curator Summary
    Encodes a member of the SMO1 family of sterol 4alpha-methyl oxidases. More specifically functions as a 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha- methyl oxidase.
    Computational Description
    sterol-4alpha-methyl oxidase 1-1 (SMO1-1); CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: sterol C4-methyl oxidase 1-2 (TAIR:AT4G22756.1); Has 2081 Blast hits to 2076 proteins in 340 species: Archae - 0; Bacteria - 283; Metazoa - 426; Fungi - 681; Plants - 428; Viruses - 3; Other Eukaryotes - 260 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR