K01705

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01705

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01705

Determination of introduced cDNA(s)

  • J033033H14 - Rice Full-length cDNAs - Original: J033033H14

    full reading [+] show sequence

    Nucleotide sequence: J033033H14 - full reading 
    GGGCCTCGGC GCCCGTTTCC TCGCTACTTC GCCGCCTGCG CCGATCTCCA 
    TTAATCCATC CATCCCGCGA GGGGGAGCAG CGGGGTAGGG GTGCCGTCGT 
    CCTGCCGCTT CCGCCTCCGG ACTAGGGATC ATGTCAGGAA GAGATCGTCT 
    GCCACGTCGC TTTATAGAGG ATGGCAGGGG CTACCCTGAC ATCCGTGTAG 
    TTGATGAACG TAGGGGCTAT CCTGACATCC GTGTAGTTGA GGATCGTAGG 
    GGCTACCATG GTATTCGTGC CATTGAGGAT CATAGGGGCT ATCCTGACAT 
    CCATGAAGGC CTTGTCATGA GGGTTGCACC TCGCTCTCAC ACGGCTATGC 
    CGGAGGAAGA AATTGAGATT CAGGGGGCCG AATTCAGGAG GCTTATGGCA 
    GATCACCGTG CTCTTGCTGA AGAACGTTTG GCCTTACACC GGGAATTACA 
    AGCTGGAAAA GATGAGGTCC GTCACTTGAA CACGATCATT GCAGACATCA 
    GTGCCAAGAA GGAAACTTAT ATCGGTGAGC TTGTTGACAA AAGGAGGAAA 
    CTTGAAGCTG AACTTAGAGC AAATGAGTCT TTAAGAGATG AGATTGTGCA 
    GCTTCGGGGT GAAATTGATA AGCACCTTGT AGTCAGGAAA GAGCTCTCTG 
    CGAAGTCTGC ATCTATCATG CATGAACTAA CCAGGGAACA ATCTAATAAA 
    CAGCAGATTC CTATGTTGAA AGCAGAGATT GATGCCCTTC GACAGGAACT 
    TGTTCATGCA AGGTCTGCAT GTGAATTAGA GCAGAAAGGA AATTTTCAGT 
    TGGTTGAACA GAAGAAAGCA ATGGAGAAGA ATATGATTTC GATGGCACAA 
    GAAATTGAAC AAATGCGAGC AGAATTAGCT AATTCCGAAG GGAGACCATG 
    GGCCCCAGGT GCGACATATG GGATGAAGCT GGGCAGCCCT GAAGTGACCT 
    TCCCTACTTC ATATGGAGAT AACTACAATA TCCATGTGGG AGGTTCCGAG 
    AAAGGTCATT CACATCTTCC TGAATCAAGC TCATGGGGTA CATATGACAA 
    CAATCGCCTT CAGTACCGTT AAGATCGCAG CTGCTATGAA AAAAGCCTCA 
    TCTATAAAAT CCCTTGTGCA TTCTCCAACT CGCAACTACA CAAACACCGT 
    GCCAACAAAT GGAGAGAGGC GGAGCGGCGG CGGCTGCCGG CGGTGGCGTG 
    GTGGTGTCGC CGTCGGCGGC GAAGGATTCG TGGCCGGAGT TGGTCGGCGT 
    GTCGTCGGAG GCGGCGAAGA CGAAGATCGG AGAGGAGAGG CCGGAGTTGG 
    ACGTGCAGGT GGTCCCCGCC GACGCCTTCG TCACCACGGA CTACAACGCC 
    GGCCGTGTCA GGGTCTTCGT CGACTCGGAC GACAAGGTCG CCAGACCTCC 
    CAAGATCGGC TAAGCTAGCT GTGCCCTAAT ATTTAATTTT AAACCCTTTG 
    TATTTTGCAT GAACAATAGA AACAGAAAAT AATTAAGCCA GTGCGAGTAG 
    TATGATCACT GTTTCACTAT AGCAATAAGA CGAGTAATAT GTATTCCCGC 
    TATAAATGAC ATATGCATCG TATGATTACT ATTGTTTTCG

    Gene models with high sequence identity

    1. AT1G55170.1 [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); ...
      E-value: 1e-43; Score: 174.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Proteinase inhibitor I13, potato inhibitor I 2e-08
    FPrintScan Proteinase inhibitor I13, potato inhibitor I 2e-08
    FPrintScan Proteinase inhibitor I13, potato inhibitor I 2e-08
    superfamily Proteinase inhibitor I13, potato inhibitor I 5.7e-20
    BlastProDom Proteinase inhibitor I13, potato inhibitor I 4e-15
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    Gene3D Proteinase inhibitor I13, potato inhibitor I 6.4e-20
    HMMPfam Proteinase inhibitor I13, potato inhibitor I 1.8e-25
    PatternScan Proteinase inhibitor I13, potato inhibitor I 0

    See the detailed result >

    AT1G55170.1

    Model type
    Protein coding
    Computational Description
    unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 13439 Blast hits to 8993 proteins in 828 species: Archae - 344; Bacteria - 1469; Metazoa - 6958; Fungi - 1008; Plants - 683; Viruses - 29; Other Eukaryotes - 2948 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J013157P20 - Rice Full-length cDNAs - Original: J013157P20

    full reading [+] show sequence

    Nucleotide sequence: J013157P20 - full reading 
    GACGTCGACA CAATACCACA CCCATCCCCC TGCCCTTCGC CGTCTCCCAC 
    CTCCACCTCA CCTGCGAGCA GCGGTGCCTC CTCTCCTCCT CTGCTGCCTC 
    CGCCGCGCGC ATCCTCCTCC CATCCATCTC TTCTCGGCCT CGGCGCCCGT 
    TTCCTCGCTA CTTCGCCGCC TGCGCCGATC TCCATTAATC CATCCATCCC 
    GCGAGGGGGA GCAGCGGGGT AGGGGTGCCG TCGTCCTGCC GCTTCCGCCT 
    CCGGACTAGG GATCATGTCA GGAAGAGATC GTCTGCCACG TCGCTTTATA 
    GAGGATGGCA GGGGCTACCC TGACATCCGT GTAGTTGATG AACGTAGGGG 
    CTATCCTGAC ATCCGTGTAG TTGAGGATCG TAGGGGCTAC CATGGTATTC 
    GTGCCATTGA GGATCATAGG GGCTATCCTG ACATCCATGA AGGCCTTGTC 
    ATGAGGGTTG CACCTCGCTC TCACACGGCT ATGCCGGAGG AAGAAATTGA 
    GATTCAGGGG GCCGAATTCA GGAGGCTTAT GGCAGATCAC CGTGCTCTTG 
    CTGAAGAACG TTTGGCCTTA CACCGGGAAT TACAAGCTGG AAAAGATGAG 
    GTCCGTCACT TGAACACGAT CATTGCAGAC ATCAGTGCCA AGAAGGAAAC 
    TTATATCGGT GAGCTTGTTG ACAAAAGGAG GAAACTTGAA GCTGAACTTA 
    GAGCAAATGA GTCTTTAAGA GATGAGATTG TGCAGCTTCG GGGTGAAATT 
    GATAAGCACC TTGTAGTCAG GAAAGAGCTC TCTGCGAAGT CTGCATCTAT 
    CATGCATGAA CTAACCAGGG AACAATCTAA TAAACAGCAG ATTCCTATGT 
    TGAAAGCAGA GATTGATGCC CTTCGACAGG AACTTGTTCA TGCAAGGTCT 
    GCATGTGAAT TAGAGCAGAA AGGAAATTTT CAGTTGGTTG AACAGAAGAA 
    AGCAATGGAG AAGAATATGA TTTCGATGGC ACAAGAAATT GAACAAATGC 
    GAGCAGAATT AGCTAATTCC GAAGGGAGAC CATGGGCCCC AGGTGCGACA 
    TATGGGATGA AGCTGGGCAG CCCTGAAGTG ACCTTCCCTA CTTCATATGG 
    AGATAACTAC AATATCCATG TGGGAGGTTC CGAGAAAGGT CATTCACATC 
    TTCCTGAATC AAGCTCATGG GGTACATATG ACAACAATCG CCTTCAGTAC 
    CGTTAAGATC GCAGCTGCTA TGAAAAAAGT CCGTGAAGAC TTCTGGGTCC 
    CATGGTCATA TCACATGGTT TAGATTATCG TATCTACCTC CTTTTTTGTG 
    GTACAATCAA TAGTTATCTT TCTTAATTAA AATTGAAATG CCTCTAATCA 
    TTTTCTTCTC TGTGTGTCAT ATAAAATATG TTCCAATGGT AACTACTGCT 
    TATACTTTGG CTCGATACCT ATATCCAAGT TTCCTTGGTT ATATGGATCC 
    ATGACACAGT TATTTTAATA TGACTTGGGT ATATATATGA TATAGTTTAG 
    TTAATGACTC AGTCATGCCA CATATGGAGC ATGAAGTCTG AATTCTATGT 
    GGAGATATAA TTAAGCATAT CAGAGAAATG TTCCTTCCAT CATGTATTAC 
    ATGTCATTCT GAAAAAAAAC CAGTGAGCTT TTTATGAAAT GAATACACAT 
    TGTTGCTTGT GTTT

    Gene models with high sequence identity

    1. AT1G55170.1 [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); ...
      E-value: 1e-43; Score: 174.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0

    See the detailed result >

    AT1G55170.1

    Model type
    Protein coding
    Computational Description
    unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 13439 Blast hits to 8993 proteins in 828 species: Archae - 344; Bacteria - 1469; Metazoa - 6958; Fungi - 1008; Plants - 683; Viruses - 29; Other Eukaryotes - 2948 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR