K01705

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01705

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01705

Determination of introduced cDNA(s)

  • J033033H14 - Rice Full-length cDNAs - Original: J033033H14

    full reading [+] show sequence

    Nucleotide sequence: J033033H14 - full reading
    GGGCCTCGGC GCCCGTTTCC TCGCTACTTC GCCGCCTGCG CCGATCTCCA 
    TTAATCCATC CATCCCGCGA GGGGGAGCAG CGGGGTAGGG GTGCCGTCGT
    CCTGCCGCTT CCGCCTCCGG ACTAGGGATC ATGTCAGGAA GAGATCGTCT
    GCCACGTCGC TTTATAGAGG ATGGCAGGGG CTACCCTGAC ATCCGTGTAG
    TTGATGAACG TAGGGGCTAT CCTGACATCC GTGTAGTTGA GGATCGTAGG
    GGCTACCATG GTATTCGTGC CATTGAGGAT CATAGGGGCT ATCCTGACAT
    CCATGAAGGC CTTGTCATGA GGGTTGCACC TCGCTCTCAC ACGGCTATGC
    CGGAGGAAGA AATTGAGATT CAGGGGGCCG AATTCAGGAG GCTTATGGCA
    GATCACCGTG CTCTTGCTGA AGAACGTTTG GCCTTACACC GGGAATTACA
    AGCTGGAAAA GATGAGGTCC GTCACTTGAA CACGATCATT GCAGACATCA
    GTGCCAAGAA GGAAACTTAT ATCGGTGAGC TTGTTGACAA AAGGAGGAAA
    CTTGAAGCTG AACTTAGAGC AAATGAGTCT TTAAGAGATG AGATTGTGCA
    GCTTCGGGGT GAAATTGATA AGCACCTTGT AGTCAGGAAA GAGCTCTCTG
    CGAAGTCTGC ATCTATCATG CATGAACTAA CCAGGGAACA ATCTAATAAA
    CAGCAGATTC CTATGTTGAA AGCAGAGATT GATGCCCTTC GACAGGAACT
    TGTTCATGCA AGGTCTGCAT GTGAATTAGA GCAGAAAGGA AATTTTCAGT
    TGGTTGAACA GAAGAAAGCA ATGGAGAAGA ATATGATTTC GATGGCACAA
    GAAATTGAAC AAATGCGAGC AGAATTAGCT AATTCCGAAG GGAGACCATG
    GGCCCCAGGT GCGACATATG GGATGAAGCT GGGCAGCCCT GAAGTGACCT
    TCCCTACTTC ATATGGAGAT AACTACAATA TCCATGTGGG AGGTTCCGAG
    AAAGGTCATT CACATCTTCC TGAATCAAGC TCATGGGGTA CATATGACAA
    CAATCGCCTT CAGTACCGTT AAGATCGCAG CTGCTATGAA AAAAGCCTCA
    TCTATAAAAT CCCTTGTGCA TTCTCCAACT CGCAACTACA CAAACACCGT
    GCCAACAAAT GGAGAGAGGC GGAGCGGCGG CGGCTGCCGG CGGTGGCGTG
    GTGGTGTCGC CGTCGGCGGC GAAGGATTCG TGGCCGGAGT TGGTCGGCGT
    GTCGTCGGAG GCGGCGAAGA CGAAGATCGG AGAGGAGAGG CCGGAGTTGG
    ACGTGCAGGT GGTCCCCGCC GACGCCTTCG TCACCACGGA CTACAACGCC
    GGCCGTGTCA GGGTCTTCGT CGACTCGGAC GACAAGGTCG CCAGACCTCC
    CAAGATCGGC TAAGCTAGCT GTGCCCTAAT ATTTAATTTT AAACCCTTTG
    TATTTTGCAT GAACAATAGA AACAGAAAAT AATTAAGCCA GTGCGAGTAG
    TATGATCACT GTTTCACTAT AGCAATAAGA CGAGTAATAT GTATTCCCGC
    TATAAATGAC ATATGCATCG TATGATTACT ATTGTTTTCG

    Gene models with high sequence identity

    1. AT1G55170.1 [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); ...
      E-value: 1e-43; Score: 174.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Proteinase inhibitor I13, potato inhibitor I 0.00000002
    FPrintScan Proteinase inhibitor I13, potato inhibitor I 0.00000002
    FPrintScan Proteinase inhibitor I13, potato inhibitor I 0.00000002
    superfamily Proteinase inhibitor I13, potato inhibitor I 5.7e-20
    BlastProDom Proteinase inhibitor I13, potato inhibitor I 0.000000000000004
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    Gene3D Proteinase inhibitor I13, potato inhibitor I 6.4e-20
    HMMPfam Proteinase inhibitor I13, potato inhibitor I 1.8e-25
    PatternScan Proteinase inhibitor I13, potato inhibitor I 0

    See the detailed result >

    AT1G55170.1

    Model type
    Protein coding
    Computational Description
    unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 13439 Blast hits to 8993 proteins in 828 species: Archae - 344; Bacteria - 1469; Metazoa - 6958; Fungi - 1008; Plants - 683; Viruses - 29; Other Eukaryotes - 2948 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • J013157P20 - Rice Full-length cDNAs - Original: J013157P20

    full reading [+] show sequence

    Nucleotide sequence: J013157P20 - full reading
    GACGTCGACA CAATACCACA CCCATCCCCC TGCCCTTCGC CGTCTCCCAC 
    CTCCACCTCA CCTGCGAGCA GCGGTGCCTC CTCTCCTCCT CTGCTGCCTC
    CGCCGCGCGC ATCCTCCTCC CATCCATCTC TTCTCGGCCT CGGCGCCCGT
    TTCCTCGCTA CTTCGCCGCC TGCGCCGATC TCCATTAATC CATCCATCCC
    GCGAGGGGGA GCAGCGGGGT AGGGGTGCCG TCGTCCTGCC GCTTCCGCCT
    CCGGACTAGG GATCATGTCA GGAAGAGATC GTCTGCCACG TCGCTTTATA
    GAGGATGGCA GGGGCTACCC TGACATCCGT GTAGTTGATG AACGTAGGGG
    CTATCCTGAC ATCCGTGTAG TTGAGGATCG TAGGGGCTAC CATGGTATTC
    GTGCCATTGA GGATCATAGG GGCTATCCTG ACATCCATGA AGGCCTTGTC
    ATGAGGGTTG CACCTCGCTC TCACACGGCT ATGCCGGAGG AAGAAATTGA
    GATTCAGGGG GCCGAATTCA GGAGGCTTAT GGCAGATCAC CGTGCTCTTG
    CTGAAGAACG TTTGGCCTTA CACCGGGAAT TACAAGCTGG AAAAGATGAG
    GTCCGTCACT TGAACACGAT CATTGCAGAC ATCAGTGCCA AGAAGGAAAC
    TTATATCGGT GAGCTTGTTG ACAAAAGGAG GAAACTTGAA GCTGAACTTA
    GAGCAAATGA GTCTTTAAGA GATGAGATTG TGCAGCTTCG GGGTGAAATT
    GATAAGCACC TTGTAGTCAG GAAAGAGCTC TCTGCGAAGT CTGCATCTAT
    CATGCATGAA CTAACCAGGG AACAATCTAA TAAACAGCAG ATTCCTATGT
    TGAAAGCAGA GATTGATGCC CTTCGACAGG AACTTGTTCA TGCAAGGTCT
    GCATGTGAAT TAGAGCAGAA AGGAAATTTT CAGTTGGTTG AACAGAAGAA
    AGCAATGGAG AAGAATATGA TTTCGATGGC ACAAGAAATT GAACAAATGC
    GAGCAGAATT AGCTAATTCC GAAGGGAGAC CATGGGCCCC AGGTGCGACA
    TATGGGATGA AGCTGGGCAG CCCTGAAGTG ACCTTCCCTA CTTCATATGG
    AGATAACTAC AATATCCATG TGGGAGGTTC CGAGAAAGGT CATTCACATC
    TTCCTGAATC AAGCTCATGG GGTACATATG ACAACAATCG CCTTCAGTAC
    CGTTAAGATC GCAGCTGCTA TGAAAAAAGT CCGTGAAGAC TTCTGGGTCC
    CATGGTCATA TCACATGGTT TAGATTATCG TATCTACCTC CTTTTTTGTG
    GTACAATCAA TAGTTATCTT TCTTAATTAA AATTGAAATG CCTCTAATCA
    TTTTCTTCTC TGTGTGTCAT ATAAAATATG TTCCAATGGT AACTACTGCT
    TATACTTTGG CTCGATACCT ATATCCAAGT TTCCTTGGTT ATATGGATCC
    ATGACACAGT TATTTTAATA TGACTTGGGT ATATATATGA TATAGTTTAG
    TTAATGACTC AGTCATGCCA CATATGGAGC ATGAAGTCTG AATTCTATGT
    GGAGATATAA TTAAGCATAT CAGAGAAATG TTCCTTCCAT CATGTATTAC
    ATGTCATTCT GAAAAAAAAC CAGTGAGCTT TTTATGAAAT GAATACACAT
    TGTTGCTTGT GTTT

    Gene models with high sequence identity

    1. AT1G55170.1 [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); ...
      E-value: 1e-43; Score: 174.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0

    See the detailed result >

    AT1G55170.1

    Model type
    Protein coding
    Computational Description
    unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 13439 Blast hits to 8993 proteins in 828 species: Archae - 344; Bacteria - 1469; Metazoa - 6958; Fungi - 1008; Plants - 683; Viruses - 29; Other Eukaryotes - 2948 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR