K01726

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01726

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01726

Determination of introduced cDNA(s)

J023049G07 - Rice Full-length cDNAs - Original: J023049G07

full reading [+] show sequence

GACCCTTCAC CCTTTCTCTC GCGGCTCGTT TGGTTGGGGG AATTTTCCAA 
GGATCCCGTT TCCGTTTCGA GGTGCCCATG GCGCTGGCGG CGCAGCTCTA 
CGGATCGGCG GCGGCGGCCG CGTACCGGAG ACTTCCACTC TACGGAGTTC 
CTTCGTCATG CCGGTGGCCG CGGACTCCTC TCGCCGCTCT CCCGAAGCTT 
TCCATCTCCA CCGGTGGAAT GGGTATGAAT CCGTTTGGTG TTGGTGCTAA 
AGTTTCAATA AAATGTACAA ATGGGACCAC TCAGGTTGAT GAGTTAAACT 
TCAGATCAAA TCAAACTGAG GAATTAGTAG AAGGAGATGC AGATACTGTT 
ACCCAGAAGA GGAGTGCAAA AATCCATGAT TTTTGCCTTG GGATCCCTTT 
TGGTGGTCTT CTATTCTGTA TGGGGCTTCT AGGATACATT TTTTCAAGAA 
GTACCATAAG CCTTGTTTTA GGTGTTGCAC CAGGGCTCAC CACGCTCTTT 
CTTGGTACCC TCAGTCTTAA ATTCTGGAGG AGTGGAAAAT CCAGTTTCAT 
ATTTATCTTG GGCCAAGCAG CAATTTCTGC TGTTCTAGCA TGGAAGTATT 
CCCATGCCTA CATCTTGACA AATAGAATCC TCCCCTGGGC CTTCTATGCA 
TCTCTGAGCA CTGCCATGGC TTGTTTCTAC GCTTATGTGC TGCTCTCCGG 
AGGAAATCCA CCACCTAAGA AGAAGATGGC AGCAACTCCA TCATCATAGA 
GCAGGATCCA GGCATTTTCT TAGTGATTAA CGCGACAGGA TGATTTGGCC 
TTTGTGCCTT TTAATGCTTT GTCTGCAAGT ATAACAGAAT TTTGAGTTAT 
CATCCCATTT GTATATTCCC TAATCTTACA TTCTCTGTGG ATTTTGGTTG 
TTGTAGCGTG AAGCTTTTTG AACAAATAAT TCTGCAGGAT GGCAATCCAT 
CCTTACTGAA CATTTTGCTC TTTTTTTTTC CCTCCAAGAG CATAAATAAA 
GGATATGTGT TTATTT

Gene models with high sequence identity

AT3G57280.1 [+] show detail - Transmembrane proteins 14C
E-value: 7e-28; Score: 121.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	Uncharacterised protein family UPF0136, Transmembrane	6.6e-15
HMMPfam	Uncharacterised protein family UPF0136, Transmembrane	1.5e-24

See the detailed result >

AT3G57280.1

Model type: Protein coding
Short Description: Transmembrane proteins 14C
Computational Description: Transmembrane proteins 14C; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0136, Transmembrane (InterPro:IPR005349); BEST Arabidopsis thaliana protein match is: Transmembrane proteins 14C (TAIR:AT3G20510.1); Has 169 Blast hits to 169 proteins in 36 species: Archae - 0; Bacteria - 2; Metazoa - 27; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link: InterPro Scan - TAIR